View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9509_high_5 (Length: 236)
Name: NF9509_high_5
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 52145543 - 52145322
Alignment:
| Q |
1 |
aatgaagacgttgatgacgaagatgaaggaactaagttatacatgtgtccaaataagtgtaaatttgaggtaacaaatgataacacaactcgttgtactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52145543 |
aatgaagacgttgatgacgaagatgaaggaactaagttatacatgtgtccaaataagtgtaaatttgaggtaacaaatgataacacaactcgttgtactg |
52145444 |
T |
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| Q |
101 |
ccctgtctgccaatgaccattctcatatttttgggtctagtccagtatactgcccgaacactatgagcagtgaagtttcttatgttggaaaaaggaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52145443 |
ccctgtctgccaatgaccattctcatatttttgggtctagtccagtatactgcccgaacactatgagcagtgaagtttcttatgttggaaaaaggaaggt |
52145344 |
T |
|
| Q |
201 |
tgctgaaaagagagtttccaat |
222 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
52145343 |
tgctaaaaagagagtttccaat |
52145322 |
T |
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