View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9509_low_10 (Length: 250)
Name: NF9509_low_10
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 8534261 - 8534500
Alignment:
| Q |
11 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8534261 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8534360 |
T |
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| Q |
111 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
210 |
Q |
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| T |
8534361 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8534460 |
T |
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| Q |
211 |
accgcaagaccgtatatatgaaacatcggaacagtacata |
250 |
Q |
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| T |
8534461 |
accgcaagaccgtatatatgaaacatcggaacagtacata |
8534500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 8599500 - 8599739
Alignment:
| Q |
11 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8599500 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8599599 |
T |
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| Q |
111 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
210 |
Q |
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| T |
8599600 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8599699 |
T |
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| Q |
211 |
accgcaagaccgtatatatgaaacatcggaacagtacata |
250 |
Q |
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| T |
8599700 |
accgcaagaccgtatatatgaaacatcggaacagtacata |
8599739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 8613926 - 8613687
Alignment:
| Q |
11 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8613926 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaa |
8613827 |
T |
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| Q |
111 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
210 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613826 |
ggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8613727 |
T |
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| Q |
211 |
accgcaagaccgtatatatgaaacatcggaacagtacata |
250 |
Q |
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| T |
8613726 |
accgcaagaccgtatatatgaaacatcggaacagtacata |
8613687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 14751921 - 14752141
Alignment:
| Q |
18 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
117 |
Q |
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|||||||||||| |||||||| || || ||||||||||| ||||| || ||| | |||||||| || ||||| || |||||||| |||| ||| || || |
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| T |
14751921 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgact |
14752020 |
T |
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| Q |
118 |
ctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
217 |
Q |
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| T |
14752021 |
ttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacattgcta |
14752117 |
T |
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| Q |
218 |
gaccgtatatatgaaacatcggaa |
241 |
Q |
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|||||||||| |||||||| |||| |
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| T |
14752118 |
gaccgtatatgtgaaacatgggaa |
14752141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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