View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9509_low_13 (Length: 237)
Name: NF9509_low_13
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 41416932 - 41416728
Alignment:
| Q |
16 |
ttcttctcttttaatatttaattataataatttgtatagggataactctactgatttgaaataaaa-gatgatgagttgaagatcctaaatttcaagctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41416932 |
ttcttctcttttaatatttaattataataatttgtatatggataactctactgatttaaaataaaaagatgatgagttgaagatcctaaatttcaagctc |
41416833 |
T |
|
| Q |
115 |
ggttggagagaaatattaatctaacaattaattattaatatttgtctaatttatttaggtgcatcatatgcaatcggtatggagtaaaaacacgcacgct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41416832 |
ggttggagagaaatattaatctaacaattaatttctaatatttgtctaatttatttaggtgcattatatgcaatcggtatggagtaaaaacacgcatgct |
41416733 |
T |
|
| Q |
215 |
agtta |
219 |
Q |
| |
|
||||| |
|
|
| T |
41416732 |
agtta |
41416728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 12005161 - 12005192
Alignment:
| Q |
125 |
aaatattaatctaacaattaattattaatatt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12005161 |
aaatattaatctaacaattaattattaatatt |
12005192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 3294553 - 3294518
Alignment:
| Q |
125 |
aaatattaatctaacaattaattattaatatttgtc |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3294553 |
aaatattaatctaacaattaattactaatatttgtc |
3294518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 10156340 - 10156375
Alignment:
| Q |
125 |
aaatattaatctaacaattaattattaatatttgtc |
160 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10156340 |
aaatattaatctaacaattaactattaatatttgtc |
10156375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 40124920 - 40124955
Alignment:
| Q |
125 |
aaatattaatctaacaattaattattaatatttgtc |
160 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40124920 |
aaatattaatctaacaattaattgttaatatttgtc |
40124955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University