View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9509_low_16 (Length: 209)

Name: NF9509_low_16
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9509_low_16
NF9509_low_16
[»] chr2 (5 HSPs)
chr2 (19-110)||(5696578-5696669)
chr2 (173-205)||(3263025-3263057)
chr2 (151-182)||(5696519-5696550)
chr2 (176-205)||(40445566-40445595)
chr2 (177-205)||(9715140-9715168)
[»] scaffold1171 (1 HSPs)
scaffold1171 (172-205)||(808-841)
[»] chr8 (1 HSPs)
chr8 (174-206)||(7653645-7653677)
[»] chr7 (3 HSPs)
chr7 (175-205)||(16537368-16537398)
chr7 (175-205)||(16628264-16628294)
chr7 (176-205)||(25982982-25983011)
[»] chr5 (5 HSPs)
chr5 (172-202)||(22627277-22627307)
chr5 (176-205)||(3223429-3223458)
chr5 (172-205)||(19849834-19849867)
chr5 (178-206)||(4125734-4125762)
chr5 (177-205)||(40687960-40687988)
[»] chr6 (3 HSPs)
chr6 (172-205)||(16735856-16735889)
chr6 (176-205)||(26716662-26716691)
chr6 (176-205)||(31951492-31951521)
[»] chr4 (4 HSPs)
chr4 (176-205)||(232982-233011)
chr4 (177-205)||(3770173-3770201)
chr4 (181-209)||(26675342-26675370)
chr4 (173-205)||(39332309-39332341)
[»] chr3 (4 HSPs)
chr3 (176-205)||(27766808-27766837)
chr3 (172-205)||(44895939-44895972)
chr3 (177-205)||(12881229-12881257)
chr3 (173-205)||(19391994-19392026)
[»] scaffold0182 (1 HSPs)
scaffold0182 (173-205)||(20585-20617)
[»] chr1 (3 HSPs)
chr1 (176-204)||(3383957-3383985)
chr1 (177-205)||(8774292-8774320)
chr1 (177-209)||(43677388-43677420)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 5696669 - 5696578
Alignment:
Q  19 aaatcccggattcaaactcaagtcaccacattttcgtctcctcaatgtaaattaaaaataaaaatccttgtattagaagcaaagatgaagtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5696669 aaatcccggattcaaactcaagtcaccacattttcgtctcctcaatgtaaattaaaaataaaaatccttgtattagaagcaaagatgaagtt 5696578  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 3263025 - 3263057
Alignment:
Q  173 ttatattttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||||||    
T  3263025 ttatattttaggcttaattgcacttttggaccc 3263057  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 5696550 - 5696519
Alignment:
Q  151 agtgtattacacatacctccaattatatttta 182  Q
    ||||||||||||||||||||||||||||||||    
T  5696550 agtgtattacacatacctccaattatatttta 5696519  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 40445566 - 40445595
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  40445566 tattttaggcttaattgcacttttggaccc 40445595  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 9715168 - 9715140
Alignment:
Q  177 attttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||    
T  9715168 attttaggcttaattgcacttttggaccc 9715140  T

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Target: scaffold1171 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 808 - 841
Alignment:
Q  172 attatattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||||||    
T  808 attatattttaggcttaattgcacttttggaccc 841  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 7653677 - 7653645
Alignment:
Q  174 tatattttaggcttaattgcacttttggaccct 206  Q
    |||||||||||||||||||||||||||||||||    
T  7653677 tatattttaggcttaattgcacttttggaccct 7653645  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 16537398 - 16537368
Alignment:
Q  175 atattttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||||    
T  16537398 atattttaggcttaattgcacttttggaccc 16537368  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 16628264 - 16628294
Alignment:
Q  175 atattttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||||    
T  16628264 atattttaggcttaattgcacttttggaccc 16628294  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 25982982 - 25983011
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  25982982 tattttaggcttaattgcacttttggaccc 25983011  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Complemental strand, 22627307 - 22627277
Alignment:
Q  172 attatattttaggcttaattgcacttttgga 202  Q
    |||||||||||||||||||||||||||||||    
T  22627307 attatattttaggcttaattgcacttttgga 22627277  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 3223429 - 3223458
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  3223429 tattttaggcttaattgcacttttggaccc 3223458  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 19849867 - 19849834
Alignment:
Q  172 attatattttaggcttaattgcacttttggaccc 205  Q
    ||||| ||||||||||||||||||||||||||||    
T  19849867 attattttttaggcttaattgcacttttggaccc 19849834  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 4125762 - 4125734
Alignment:
Q  178 ttttaggcttaattgcacttttggaccct 206  Q
    |||||||||||||||||||||||||||||    
T  4125762 ttttaggcttaattgcacttttggaccct 4125734  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 40687988 - 40687960
Alignment:
Q  177 attttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||    
T  40687988 attttaggcttaattgcacttttggaccc 40687960  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 16735889 - 16735856
Alignment:
Q  172 attatattttaggcttaattgcacttttggaccc 205  Q
    ||||| ||||||||||||||||||||||||||||    
T  16735889 attattttttaggcttaattgcacttttggaccc 16735856  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 26716691 - 26716662
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  26716691 tattttaggcttaattgcacttttggaccc 26716662  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 31951521 - 31951492
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  31951521 tattttaggcttaattgcacttttggaccc 31951492  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 233011 - 232982
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  233011 tattttaggcttaattgcacttttggaccc 232982  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 3770173 - 3770201
Alignment:
Q  177 attttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||    
T  3770173 attttaggcttaattgcacttttggaccc 3770201  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 26675370 - 26675342
Alignment:
Q  181 taggcttaattgcacttttggaccctatc 209  Q
    |||||||||||||||||||||||||||||    
T  26675370 taggcttaattgcacttttggaccctatc 26675342  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 39332309 - 39332341
Alignment:
Q  173 ttatattttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||| ||||||||||    
T  39332309 ttatattttaggcttaattgcatttttggaccc 39332341  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 27766837 - 27766808
Alignment:
Q  176 tattttaggcttaattgcacttttggaccc 205  Q
    ||||||||||||||||||||||||||||||    
T  27766837 tattttaggcttaattgcacttttggaccc 27766808  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 44895972 - 44895939
Alignment:
Q  172 attatattttaggcttaattgcacttttggaccc 205  Q
    ||||| ||||||||||||||||||||||||||||    
T  44895972 attattttttaggcttaattgcacttttggaccc 44895939  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 12881229 - 12881257
Alignment:
Q  177 attttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||    
T  12881229 attttaggcttaattgcacttttggaccc 12881257  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 19392026 - 19391994
Alignment:
Q  173 ttatattttaggcttaattgcacttttggaccc 205  Q
    |||| ||||||||||||||||||||||||||||    
T  19392026 ttatgttttaggcttaattgcacttttggaccc 19391994  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 20585 - 20617
Alignment:
Q  173 ttatattttaggcttaattgcacttttggaccc 205  Q
    |||||||| ||||||||||||||||||||||||    
T  20585 ttatatttaaggcttaattgcacttttggaccc 20617  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 3383957 - 3383985
Alignment:
Q  176 tattttaggcttaattgcacttttggacc 204  Q
    |||||||||||||||||||||||||||||    
T  3383957 tattttaggcttaattgcacttttggacc 3383985  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 8774292 - 8774320
Alignment:
Q  177 attttaggcttaattgcacttttggaccc 205  Q
    |||||||||||||||||||||||||||||    
T  8774292 attttaggcttaattgcacttttggaccc 8774320  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 43677420 - 43677388
Alignment:
Q  177 attttaggcttaattgcacttttggaccctatc 209  Q
    ||||| |||||||||||||||||||||||||||    
T  43677420 atttttggcttaattgcacttttggaccctatc 43677388  T

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