View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9509_low_2 (Length: 704)
Name: NF9509_low_2
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 157 - 688
Target Start/End: Complemental strand, 44566707 - 44566176
Alignment:
| Q |
157 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
256 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566707 |
ctaaccgaatccacagaagagattaaggaaacgacacacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
44566608 |
T |
|
| Q |
257 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566607 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatccggccgttttcagtcagcaaaaaagcaaatgtccatgtgactgc |
44566508 |
T |
|
| Q |
357 |
caaacccaaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaa |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566507 |
caaacccaaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaa |
44566408 |
T |
|
| Q |
457 |
ctcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaatatata |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44566407 |
ctcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgcaaaaagcaatatata |
44566308 |
T |
|
| Q |
557 |
ataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatatct |
656 |
Q |
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| T |
44566307 |
ataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatatct |
44566208 |
T |
|
| Q |
657 |
gtactgcaccgatctcaagacacgtgccaact |
688 |
Q |
| |
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| T |
44566207 |
gtactgcaccgatctcaagacacgtgccaact |
44566176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 321 - 687
Target Start/End: Original strand, 36032639 - 36033001
Alignment:
| Q |
321 |
ttcagtcagcaaaaaagcaaatgtccatgtgactgccaaacccaaaggcacctgtaaattaggtaaagaaaata----atatcacttaacaaaaatcatt |
416 |
Q |
| |
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|||||||||||| ||||||| || |||||| | ||||||||||||||| ||||| |||||||||||| |||||| | ||||||||||| |||||||| |
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| T |
36032639 |
ttcagtcagcaagaaagcaactgcccatgtaattgccaaacccaaaggaacctgcaaattaggtaaaaaaaatatataacatcacttaacagaaatcatt |
36032738 |
T |
|
| Q |
417 |
ttttacaccacagaaatttattttctcttctgaagagcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaa |
516 |
Q |
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| |||||| ||||||||||||||| || || |||| ||||| |||| ||| | ||||||| ||||||||||||||| |||||||| | ||||||| |
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| T |
36032739 |
tgttacacagcagaaatttattttcactgctatagagtaactcggaaggatattatggcattgcacttactgcatatattagaaatatgcggtgtccaag |
36032838 |
T |
|
| Q |
517 |
aacagatatcttacgaagatactgccaaaagcaatatataataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattc |
616 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||| | | ||||| | | | ||| ||||||||||||||||| ||| ||||||||| |
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| T |
36032839 |
aacagatatcttacgaagatactgcagaaagcaataaaaaatggatgaagtcagcgc---gtgatgatcaataccatagacaaagtgggagtctgaattc |
36032935 |
T |
|
| Q |
617 |
aacaaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagacacgtgccaac |
687 |
Q |
| |
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||||||||| |||||||||||| ||||||||| |||| |||||| ||||||| ||| |||||||| |
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| T |
36032936 |
-----acttacaagggaaaaaacaataaccactaatatttgtattgcaccaatctcaatacatgtgccaac |
36033001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 157 - 313
Target Start/End: Original strand, 36032397 - 36032553
Alignment:
| Q |
157 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
256 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || |||||||||| |||||||||||| | ||| ||||||||||||||||||| ||||||||||||| |
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| T |
36032397 |
ctaaccgaatccacggatgagattaaggaaaccacacacatcacaagagccattttccagtggaagacaggagtaccccattgcaatggatagggaaatt |
36032496 |
T |
|
| Q |
257 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatcc |
313 |
Q |
| |
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|||||||||||| |||| | |||| || ||||||| |||| |||||| |||||||| |
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| T |
36032497 |
taaaccatggggatgatttgattgcatgcgaagtatcaactcgacaatatttcatcc |
36032553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 44566846 - 44566765
Alignment:
| Q |
18 |
attttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgagatcaagttagactataaacgtactcagagtc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
44566846 |
attttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgagatcaagttagactatcaacgtattcagagtc |
44566765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 157 - 313
Target Start/End: Complemental strand, 20122606 - 20122450
Alignment:
| Q |
157 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
256 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || ||||| |||| |||||||||||| | || |||||| ||||||||| | ||||||||||||| |
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| T |
20122606 |
ctaaccgaatccacggatgagattaaggaaaccacacacattacaagagccattttccagtgaaagacaggaacaccccattgtaacggatagggaaatc |
20122507 |
T |
|
| Q |
257 |
taaaccatgggggtgatgtcattgtatcagaagtattaacttgacaatgtttcatcc |
313 |
Q |
| |
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|||||||||| | ||| ||| || || |||||||| ||| ||||||| ||||||| |
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| T |
20122506 |
taaaccatggagaggatttcaatgcatgagaagtatcaacccgacaatgcttcatcc |
20122450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 678
Target Start/End: Complemental strand, 20122045 - 20121987
Alignment:
| Q |
620 |
aaacttacaagacaaaaaacaataaacactaatatctgtactgcaccgatctcaagaca |
678 |
Q |
| |
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|||||| ||||| | |||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
20122045 |
aaacttccaagagagaaaacaataaccactaatatctgtactgcaccaatctcaagaca |
20121987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 540
Target Start/End: Complemental strand, 20122217 - 20122158
Alignment:
| Q |
481 |
acttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactg |
540 |
Q |
| |
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||||||||| || || |||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
20122217 |
acttactgcgtagattagaaatatgcgatgtccaagaacagatatcttacgaagatactg |
20122158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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