View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9509_low_3 (Length: 474)
Name: NF9509_low_3
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 46399487 - 46399942
Alignment:
| Q |
1 |
gtaattaccaagccactacaacaataagagaaaccctaaagaggagaggagtataagtataacccaagaattagaacacagattatgttgaatagttttt |
100 |
Q |
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| T |
46399487 |
gtaattaacaagccactacaacaataagagaaaccctaaagaggagaggagtataagtataacccaagaattagaacacagattatgttgaatagatttt |
46399586 |
T |
|
| Q |
101 |
gaattataacagcattggattgcaatagctggtgccattagttcttaatcacggtgatccagcttttagattgcaactcatccatcactactgcattcca |
200 |
Q |
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| T |
46399587 |
gaattttaacagcattggattgcaatagctggtgccattagttcttaatcaaggtgatccagcttttagattgcaactcatccatcactactgcattcca |
46399686 |
T |
|
| Q |
201 |
gtctacaaatggtacaacatgccttatattcatatattaacataacaagtatcaattttcacagcattaagatgacccagaggtgctcatcgataaaatg |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46399687 |
gtctacaaatggtacaccatgccttatattcatatattaacataacaagtatcaattttcacagcattaagatgacccacaggtgctcatcgataaaatg |
46399786 |
T |
|
| Q |
301 |
gtattaccttagaccacaaagtagtaagaatttgagcaccacgtgccccaaggtcgctgcaaaaagtcattgtctagaaaacaaacaagtagaaccctaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46399787 |
gtattaccttagaccacaaagtagtaagaatttgagcaccacgtgccccaaggtcgctgcaaaaagtcattgtctagaaaacaaacaagtagaaccctaa |
46399886 |
T |
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| Q |
401 |
tgaacattgcagttagtggccaacttgacaaacatcaatggtgtcccccttgcccc |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46399887 |
tgaacattgcagttagtggccaacttgacaaacatcaatggtgtcccccttgcccc |
46399942 |
T |
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