View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9509_low_6 (Length: 344)
Name: NF9509_low_6
Description: NF9509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9509_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 30490356 - 30490156
Alignment:
| Q |
8 |
aagcagagactatcaccattgcaatatatgctctggcaggttactacttcatgtacctcggtaaacaacttatattattaaataaatataacaagccaca |
107 |
Q |
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| T |
30490356 |
aagcagagactatcaccattgcaatatatgctctggcaggttactacttcatgtacctcggtaaacaacttatattattaaataaatataacaagccaca |
30490257 |
T |
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| Q |
108 |
aacacaaagtatacagtgtcagcaagtcaacccaaattctcaatatcaaatactaacataaaattctatcccatccgcgcataccttcctcttgtattga |
207 |
Q |
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| T |
30490256 |
aacac--agtatacagtgtcatcaagtctcgccaaattctcattatcaaatactaac-----attctatcccatccgcgcataccttcctcttgtattga |
30490164 |
T |
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| Q |
208 |
ttaacaca |
215 |
Q |
| |
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|||||||| |
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| T |
30490163 |
ttaacaca |
30490156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 30521179 - 30520963
Alignment:
| Q |
8 |
aagcagagactatcaccattgcaatatatgctctggcaggttactacttcatgtacctc--ggtaaacaacttatat-------tattaaataaatataa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
30521179 |
aagcagagactatcaccattgcaatatatgctctggcaggttactacttcatgtacctctaggtaaacaacttatattattaaatattaaataaatataa |
30521080 |
T |
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| Q |
99 |
caagccacaaacacaaagtatacagtgtcagcaagtcaacccaaattctcaatatcaaatactaacataaaattctatcccatccgcgcataccttcctc |
198 |
Q |
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| T |
30521079 |
caagccacaaacacaaaatatacagtgtcatcaagtcttgccaaattcacagtatcaaatactaacatgcaattatgtgccatccgcacataccttcctc |
30520980 |
T |
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| Q |
199 |
ttgtattgattaacaca |
215 |
Q |
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||| |||||||||||| |
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| T |
30520979 |
ctgttttgattaacaca |
30520963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 30490086 - 30490027
Alignment:
| Q |
285 |
gcatcatttagatcccaacaacagtagtacccatatcattctacttcatgtcttcttcct |
344 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30490086 |
gcatcatttagatcccaaccacagtagtacccatatcattctacttcatgtcttcttcct |
30490027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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