View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9510_low_1 (Length: 338)
Name: NF9510_low_1
Description: NF9510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9510_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 36353966 - 36353649
Alignment:
| Q |
18 |
cttgtgttcctcttgtctatgatttcttatcagtcttcttttcatgaacgttggtttcctttcgctacaagatgaagatctaattctcaactagttggca |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
36353966 |
cttgtgttcctcttgtttatgatttcttatcagtcttcttttcatgaacgttggtttcctttcgctacaagatgaagatctcattctcaactagttggta |
36353867 |
T |
|
| Q |
118 |
tctatatagaatcgacacttcagattggatgtctgataccgacatgatactgacatatatagttacgttcaaccactcgttttgttaaagaaatatta-- |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36353866 |
tctatatagaatcgacacttcagattggaggtctgataccgacatgatactgatatatatagttacgttcaaccacttgttttgttaaagaaatattatt |
36353767 |
T |
|
| Q |
216 |
gtgtaggagctagtgcagtattgtgtctaatatttatgcttgtgtcgttgcttc----atcggttcacgttggaggtcagtgtgtgtgaactctatgtaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36353766 |
gtgtaggagctagtgcagtattgtgtctaatatttatgcttgtgtcgttgcttcatcgatcggttgacgttggaggtcagtgtgtgtgaactctatgtaa |
36353667 |
T |
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| Q |
312 |
tatttttcatagtataat |
329 |
Q |
| |
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|||||||||||||||||| |
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| T |
36353666 |
tatttttcatagtataat |
36353649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 36355252 - 36355191
Alignment:
| Q |
18 |
cttgtgttcctcttgtctatgatttcttatcagtcttcttttcatgaacgttggtttccttt |
79 |
Q |
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||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
36355252 |
cttgtgttccttttgttcatgatggctcatcagtcttcttttcatgaacgttggtttccttt |
36355191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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