View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9510_low_3 (Length: 288)

Name: NF9510_low_3
Description: NF9510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9510_low_3
NF9510_low_3
[»] chr2 (12 HSPs)
chr2 (21-279)||(28221657-28221915)
chr2 (21-279)||(28214369-28214627)
chr2 (21-275)||(32310207-32310463)
chr2 (21-279)||(32786808-32787068)
chr2 (21-275)||(32564357-32564613)
chr2 (83-275)||(32814020-32814212)
chr2 (21-275)||(32306074-32306330)
chr2 (115-231)||(32316568-32316684)
chr2 (115-269)||(28174552-28174704)
chr2 (189-269)||(28171417-28171497)
chr2 (221-279)||(32317376-32317434)
chr2 (219-269)||(28183044-28183094)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 28221657 - 28221915
Alignment:
Q  21 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnnaaaaccttgaatatgactaatgagatctgttggtttct 120  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  28221657 tgtggccacagagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacactttttataaaaccttgaatatgactaatgagatctgttggtttct 28221756  T
Q  121 tgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacccaagta 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  28221757 tgataatctgaaggtgcacacaacattggaaaaatctgttgcgatttcattcagcaaaggctctacgactttcaaggaacagggcaaccagacccgagta 28221856  T
Q  221 tacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28221857 tacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 28221915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 28214627 - 28214369
Alignment:
Q  21 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnnaaaaccttgaatatgactaatgagatctgttggtttct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||    
T  28214627 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattacgatcacactttttataaaaccttgaatatgactaatgagatctgttggtttct 28214528  T
Q  121 tgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacccaagta 220  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  28214527 tgataatctaaaggagaacacaacattggaaaaatcggttgcgatttcattcagcaaaggctgtacgactttcaaggaacagggcaaccagacccgagta 28214428  T
Q  221 tacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 279  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28214427 tacctctcgatttccttagtcagatgaggcaaaactgtcctgacaacaataagaataat 28214369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 32310207 - 32310463
Alignment:
Q  21 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgat--cacacnnnnnnnaaaaccttgaatatgactaatgagatctgttggttt 118  Q
    ||||||||||||||| | ||||||| |||||||| |||||| |||| |||  |||||       ||||||||||||| | ||||||||||||||||||||    
T  32310207 tgtggtcacaaagacatgaaaaaccttgatgtcgtagctgagattgtgatatcacacattttttaaaaccttgaataaggctaatgagatctgttggttt 32310306  T
Q  119 cttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacccaag 218  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||    
T  32310307 cttgataatctaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggctgtacgactttcaaggaacagggcaaccagatccgag 32310406  T
Q  219 tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 275  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  32310407 tatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa 32310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 32787068 - 32786808
Alignment:
Q  21 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnn--aaaaccttgaatatgactaatgagatctgttggttt 118  Q
    ||||||||||||||| ||||||||| |||||||| |||||| |||| |||| |||         ||||||||||||| | ||||||||||||||||||||    
T  32787068 tgtggtcacaaagacatcaaaaaccctgatgtcgtagctgagattgtgatcccacatattttttaaaaccttgaataaggctaatgagatctgttggttt 32786969  T
Q  119 cttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacccaag 218  Q
    |||||||| ||  ||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32786968 cttgataaactacaggaggacacaacattggaaaaatcggttgcgatttctttcagcaaaggctgtacgactttcaaggaacagggcaaccagacccaag 32786869  T
Q  219 tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 279  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  32786868 tatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaataat 32786808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 32564613 - 32564357
Alignment:
Q  21 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgat--cacacnnnnnnnaaaaccttgaatatgactaatgagatctgttggttt 118  Q
    ||||||||||||||| | ||||||| |||||||| |||||| |||| |||  |||||       ||||||||||||| | ||||||||||||||||||||    
T  32564613 tgtggtcacaaagacatgaaaaaccttgatgtcgtagctgagattgtgatatcacacattttttaaaaccttgaataaggctaatgagatctgttggttt 32564514  T
Q  119 cttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacccaag 218  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||    
T  32564513 cttgataatctaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggttgtacgactttcaaggaacagggcaaccagatccgag 32564414  T
Q  219 tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 275  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  32564413 tatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa 32564357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 83 - 275
Target Start/End: Complemental strand, 32814212 - 32814020
Alignment:
Q  83 aaaaccttgaatatgactaatgagatctgttggtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggct 182  Q
    ||||||||| ||| | ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||| ||| |    
T  32814212 aaaaccttgtataaggctaatgagatctgttggtttcttgataatttaaaggaggacacaacattggaaaaatcggttgcgatttcattcagcaaaggtt 32814113  T
Q  183 gtacgactttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 275  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  32814112 gtacgactttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaa 32814020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 32306074 - 32306330
Alignment:
Q  21 tgtggtcacaaagacttcaaaaaccatgatgtcgcagctgaaattgcgatcacacnnnnnnna--aaaccttgaatatgactaatgagatctgttggttt 118  Q
    ||||||| ||||||| ||||||||| |||||||| |||||| |||| |||| |||          |||||||||||| |  |||||||||||||||||||    
T  32306074 tgtggtcgcaaagacatcaaaaaccctgatgtcgtagctgagattgtgatctcacgtaatttttcaaaccttgaatagggttaatgagatctgttggttt 32306173  T
Q  119 cttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacccaag 218  Q
    || |||||| |  ||| | ||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||    
T  32306174 ctggataatatacaggaggacacaaccttggaaaaatcggttgtgatttcattcagcaaaggttgtacgactttcaaggaacagggcaaccagacccgag 32306273  T
Q  219 tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaa 275  Q
    |||||||||||||||  |||||| |||||| | ||||||||||||| ||| ||||||    
T  32306274 tatacctctcgattttttcagtctgatgagactaaactgtcctgactacagtaagaa 32306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 32316568 - 32316684
Alignment:
Q  115 gtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacc 214  Q
    ||||||||||||| | |||| | ||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||||||| | |||| ||||     
T  32316568 gtttcttgataatataaaggaggacacaacattgaaaaaatcggttgcgatttcatttagcaaaggttgtacgactttaaaggaacatgacaactagact 32316667  T
Q  215 caagtatacctctcgat 231  Q
    | | |||||||||||||    
T  32316668 cgaatatacctctcgat 32316684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 269
Target Start/End: Original strand, 28174552 - 28174704
Alignment:
Q  115 gtttcttgataatctgaaggtgcacacaacattggaaaaatcggttgcgatttcattcagcagaggctgtacgactttcaaggaacagggcaaccagacc 214  Q
    ||||||||||||| ||||||   |||||||||||| |||||| |||| ||||| |||   || || |||||| ||||| ||||||||| |||||||||||    
T  28174552 gtttcttgataatgtgaagg---acacaacattggcaaaatcagttgtgatttgatttgacaaagtctgtacaactttaaaggaacagcgcaaccagacc 28174648  T
Q  215 -caagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 269  Q
        ||||| |||| ||||| || ||||||||||||| ||||||||| ||||||||    
T  28174649 tgtcgtatagctcttgattttcttagtcagatgaggctaaactgtccagacaacaa 28174704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 28171417 - 28171497
Alignment:
Q  189 ctttcaaggaacagggcaaccagacccaagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 269  Q
    |||||||||||||| |||||||||||  ||||||| ||| ||||| || ||| ||||||||||||||||||  ||||||||    
T  28171417 ctttcaaggaacagcgcaaccagacctgagtatacttcttgatttgcttagtaagatgaggcaaaactgtcaagacaacaa 28171497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 32317376 - 32317434
Alignment:
Q  221 tacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataat 279  Q
    ||||||||||||| || ||||| ||||||||||| ||||||||||||||| ||||||||    
T  32317376 tacctctcgattttctaagtcatatgaggcaaaattgtcctgacaacaattagaataat 32317434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 28183044 - 28183094
Alignment:
Q  219 tatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaa 269  Q
    ||||| ||| |||||||| ||||||||||||||||||||||| ||||||||    
T  28183044 tatacttcttgatttccttagtcagatgaggcaaaactgtccagacaacaa 28183094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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