View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9510_low_6 (Length: 258)
Name: NF9510_low_6
Description: NF9510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9510_low_6 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 42313358 - 42313116
Alignment:
| Q |
4 |
aaatttgtcatcgtcactctccacctctcaatttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-att |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
42313358 |
aaatttgtcgtcgtcactctccacctctcaatttatcaaaatagagcaattgggttttcaggttttacagttttgaaccagttggtaaattggctcgatt |
42313259 |
T |
|
| Q |
103 |
ggtggttgttaatttatttattttttggaaaagttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttc |
202 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42313258 |
ggtggttgttaatttatttattttttggaaaagttttagctttggttaaaaattgttgaagaactaaacatgattgtgagtttctgtgttatataatttc |
42313159 |
T |
|
| Q |
203 |
tgacataagatgatgtatttttatgtctatttgttcatgatgt |
245 |
Q |
| |
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||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
42313158 |
tgatataagatgatgtatttttgtgtctatttgttcatgatgt |
42313116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 20910210 - 20909999
Alignment:
| Q |
36 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20910210 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
20910111 |
T |
|
| Q |
135 |
gttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgta-tttttatgtctatt |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||| |
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| T |
20910110 |
gttttagctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctatt |
20910011 |
T |
|
| Q |
234 |
tgttcatgatgt |
245 |
Q |
| |
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|||||||||||| |
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| T |
20910010 |
tgttcatgatgt |
20909999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 20924658 - 20924447
Alignment:
| Q |
36 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaa |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20924658 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
20924559 |
T |
|
| Q |
135 |
gttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgta-tttttatgtctatt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||| |
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| T |
20924558 |
gttttagctttggttaaaaattgttgaagaactaaacatggctgtgagtttctgtgttatataatttctgacatgagatgaagtattttttgtgtctatt |
20924459 |
T |
|
| Q |
234 |
tgttcatgatgt |
245 |
Q |
| |
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|||||||||||| |
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| T |
20924458 |
tgttcatgatgt |
20924447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 36 - 245
Target Start/End: Complemental strand, 41327102 - 41326892
Alignment:
| Q |
36 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41327102 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
41327003 |
T |
|
| Q |
135 |
gttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtatttttatgtctattt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||| ||||||||| |
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| T |
41327002 |
gttttagctttggttaaaaattgttgaagaactaaacatggttgtgagtttctgtgttatataatttccgatatgagatgatgtatttttgtgtctattt |
41326903 |
T |
|
| Q |
235 |
gttcatgatgt |
245 |
Q |
| |
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||||| |||| |
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| T |
41326902 |
cttcatcatgt |
41326892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 53689708 - 53689890
Alignment:
| Q |
39 |
tcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagtt |
137 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
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| T |
53689708 |
tcaaaatagagcaattgggttttcaagttctacagttttgaaccaattggtaaatttgctagattggtggttgttaattc-----ttttttggaaaagtt |
53689802 |
T |
|
| Q |
138 |
tt-agctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtattttt |
224 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
53689803 |
tttagctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctgacatgagatgatgtattttt |
53689890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 244
Target Start/End: Complemental strand, 52311190 - 52310987
Alignment:
| Q |
39 |
tcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagtt |
137 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||| || |
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| T |
52311190 |
tcaaaatagagcaattgggttttcaagttctgcagttttgaaccaattggtaaatttgctagattggtggttgttaattc-----ttttttagaattttt |
52311096 |
T |
|
| Q |
138 |
tt-agctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtat-ttttatgtctatttg |
235 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||||||||| |||| ||||||||||| |||| | |||||| | |
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|
| T |
52311095 |
tttagctttggttaaaaattgttgaataactaaacagggctgtgagtttctgttttaaataatttctaacatgagatgatgtattttttgtatctattag |
52310996 |
T |
|
| Q |
236 |
ttcatgatg |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
52310995 |
ttcatgatg |
52310987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 18940265 - 18940083
Alignment:
| Q |
38 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagt |
136 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||| |||| |||| |||||| ||||||||||| || ||| |||||| |
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|
| T |
18940265 |
atcaaaatagagcaattgggttttcaagtgctgtagttttgaaccaatc----aatttgctcgattggtcgttgttaattt-----ttgttttgaaaaga |
18940175 |
T |
|
| Q |
137 |
ttta-gctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtatttttatg |
227 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| |||||| ||||||||||||||| ||||||||||||| ||| |||| || |||||||||| |
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|
| T |
18940174 |
tttaagctttgattaaaaatagttgaagaattaaacagggttgtgagtttctgttttatataatttctagcatgagattatatatttttatg |
18940083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 7828646 - 7828467
Alignment:
| Q |
38 |
atcaaaatagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctc-attggtggttgttaatttatttattttttggaaaagt |
136 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||| |||| |||| ||||| |||||||||| || ||| ||||||| |
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|
| T |
7828646 |
atcaaaatagagcaattgggttttcaagtactgcagttttgaaccaatc----aatttgctcgattgggcattgttaattt-----ttgttttgaaaagt |
7828556 |
T |
|
| Q |
137 |
-tttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttctgacataagatgatgtattttt |
224 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||| || ||||||||||| |
|
|
| T |
7828555 |
ctttagctttggttaaaaatagttgaagaactaaacggggctgtgagtttctgttttatataatttctagcatgggaagatgtattttt |
7828467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 42479 - 42412
Alignment:
| Q |
136 |
ttttagctttggttaaaaattgttgaagaactaaacatagttgtgagtttctgtgttatataatttct |
203 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||| ||| ||||||||||| ||| ||||||||||||| |
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|
| T |
42479 |
ttttagctttagttcaaaatagttgaagaacttaacggggttgtgagtttttgttttatataatttct |
42412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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