View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9511_low_1 (Length: 407)

Name: NF9511_low_1
Description: NF9511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9511_low_1
NF9511_low_1
[»] chr1 (11 HSPs)
chr1 (140-404)||(14903806-14904070)
chr1 (140-291)||(9114819-9114971)
chr1 (159-291)||(9115982-9116114)
chr1 (139-291)||(14904516-14904668)
chr1 (139-260)||(17690887-17691008)
chr1 (142-260)||(17689738-17689855)
chr1 (138-205)||(37499443-37499510)
chr1 (139-211)||(30335237-30335308)
chr1 (142-197)||(37499178-37499233)
chr1 (138-191)||(7204314-7204367)
chr1 (154-191)||(11653113-11653150)
[»] chr4 (33 HSPs)
chr4 (139-404)||(28450749-28451014)
chr4 (139-266)||(28451486-28451613)
chr4 (131-260)||(9450874-9451003)
chr4 (139-260)||(9449714-9449835)
chr4 (138-253)||(4437678-4437793)
chr4 (142-252)||(12585382-12585492)
chr4 (140-254)||(9268023-9268137)
chr4 (140-254)||(10468702-10468816)
chr4 (141-211)||(45667232-45667302)
chr4 (140-254)||(3990897-3991011)
chr4 (137-253)||(17931285-17931401)
chr4 (143-211)||(25225793-25225861)
chr4 (140-252)||(49028487-49028599)
chr4 (142-253)||(4438996-4439107)
chr4 (128-211)||(10286398-10286481)
chr4 (141-254)||(52677553-52677666)
chr4 (140-211)||(12585158-12585229)
chr4 (132-224)||(16067576-16067666)
chr4 (140-205)||(17932146-17932211)
chr4 (140-200)||(12315855-12315915)
chr4 (139-205)||(52677823-52677889)
chr4 (143-211)||(10202681-10202749)
chr4 (141-217)||(21325689-21325765)
chr4 (139-222)||(49028262-49028345)
chr4 (140-222)||(10468480-10468562)
chr4 (142-206)||(53892253-53892317)
chr4 (137-191)||(27509630-27509684)
chr4 (142-187)||(622346-622391)
chr4 (144-221)||(21038119-21038195)
chr4 (140-173)||(45667372-45667405)
chr4 (139-191)||(32617604-32617656)
chr4 (142-206)||(36098747-36098811)
chr4 (141-193)||(48207785-48207837)
[»] chr8 (13 HSPs)
chr8 (139-404)||(10536599-10536864)
chr8 (141-288)||(32539374-32539520)
chr8 (139-266)||(10535999-10536126)
chr8 (243-404)||(32538347-32538497)
chr8 (141-211)||(18203321-18203391)
chr8 (142-222)||(30905980-30906060)
chr8 (164-206)||(32538283-32538325)
chr8 (140-205)||(18202773-18202838)
chr8 (140-191)||(9237763-9237814)
chr8 (132-191)||(10398705-10398764)
chr8 (139-193)||(9237311-9237365)
chr8 (141-187)||(30905397-30905443)
chr8 (140-193)||(5881406-5881459)
[»] chr7 (14 HSPs)
chr7 (139-404)||(18471589-18471843)
chr7 (142-290)||(8328197-8328345)
chr7 (139-287)||(18470138-18470286)
chr7 (143-291)||(8342595-8342731)
chr7 (141-220)||(4264977-4265056)
chr7 (141-219)||(8329038-8329115)
chr7 (140-205)||(8905640-8905705)
chr7 (139-254)||(4265198-4265313)
chr7 (167-254)||(8594089-8594176)
chr7 (139-206)||(25749400-25749467)
chr7 (238-291)||(8341930-8341983)
chr7 (137-191)||(22207462-22207516)
chr7 (137-190)||(8735739-8735792)
chr7 (139-191)||(19069959-19070011)
[»] chr2 (19 HSPs)
chr2 (140-291)||(4733304-4733455)
chr2 (139-291)||(4734137-4734289)
chr2 (138-260)||(14159204-14159326)
chr2 (139-260)||(14160372-14160493)
chr2 (139-252)||(4410599-4410712)
chr2 (138-254)||(38695110-38695226)
chr2 (144-254)||(4409164-4409274)
chr2 (140-222)||(18166633-18166715)
chr2 (139-211)||(42963033-42963105)
chr2 (139-254)||(42962767-42962882)
chr2 (139-221)||(18171335-18171417)
chr2 (139-222)||(38694887-38694970)
chr2 (183-255)||(34128271-34128343)
chr2 (138-231)||(39110070-39110163)
chr2 (154-191)||(23461231-23461268)
chr2 (138-191)||(39110431-39110484)
chr2 (139-191)||(7182349-7182401)
chr2 (139-191)||(36099292-36099344)
chr2 (139-191)||(45001052-45001104)
[»] chr5 (18 HSPs)
chr5 (139-266)||(9379929-9380056)
chr5 (141-291)||(9380638-9380788)
chr5 (139-253)||(34634067-34634181)
chr5 (138-255)||(1501052-1501169)
chr5 (139-254)||(23322320-23322435)
chr5 (140-222)||(43183230-43183312)
chr5 (137-222)||(42792945-42793030)
chr5 (139-211)||(5841142-5841214)
chr5 (139-222)||(23322097-23322180)
chr5 (155-254)||(25088419-25088518)
chr5 (155-254)||(25146388-25146487)
chr5 (139-201)||(15933602-15933664)
chr5 (140-210)||(20244517-20244587)
chr5 (143-211)||(5840880-5840948)
chr5 (139-211)||(15933355-15933427)
chr5 (143-205)||(25089061-25089123)
chr5 (143-205)||(25147030-25147092)
chr5 (154-191)||(43476294-43476331)
[»] chr3 (30 HSPs)
chr3 (137-260)||(16907927-16908050)
chr3 (137-252)||(46684095-46684210)
chr3 (139-253)||(46685488-46685602)
chr3 (138-254)||(24107149-24107265)
chr3 (139-254)||(27864798-27864913)
chr3 (138-211)||(31596752-31596825)
chr3 (139-221)||(27865053-27865135)
chr3 (140-202)||(38758881-38758943)
chr3 (139-211)||(14812426-14812498)
chr3 (138-254)||(19860712-19860826)
chr3 (138-222)||(24107405-24107489)
chr3 (139-222)||(3171488-3171571)
chr3 (139-221)||(19860490-19860572)
chr3 (140-201)||(18025880-18025941)
chr3 (130-220)||(54446271-54446362)
chr3 (140-189)||(11422379-11422428)
chr3 (139-211)||(38758607-38758679)
chr3 (139-187)||(3171775-3171823)
chr3 (137-231)||(10817769-10817863)
chr3 (139-191)||(30385180-30385232)
chr3 (139-191)||(42592399-42592451)
chr3 (164-211)||(18026116-18026163)
chr3 (151-222)||(21792228-21792299)
chr3 (139-193)||(22976980-22977034)
chr3 (142-191)||(18024567-18024616)
chr3 (139-231)||(18024884-18024976)
chr3 (138-190)||(12062014-12062066)
chr3 (201-257)||(24360702-24360758)
chr3 (139-191)||(25629430-25629482)
chr3 (142-222)||(54446022-54446102)
[»] scaffold0069 (2 HSPs)
scaffold0069 (142-254)||(19897-20009)
scaffold0069 (142-222)||(20153-20232)
[»] scaffold0008 (1 HSPs)
scaffold0008 (130-252)||(266844-266966)
[»] chr6 (15 HSPs)
chr6 (142-254)||(3720052-3720165)
chr6 (138-254)||(3659174-3659289)
chr6 (138-254)||(5367637-5367752)
chr6 (139-253)||(8286787-8286901)
chr6 (139-252)||(8287389-8287502)
chr6 (139-205)||(3658951-3659017)
chr6 (102-139)||(11626642-11626679)
chr6 (176-220)||(5367451-5367495)
chr6 (131-191)||(30859911-30859971)
chr6 (140-191)||(9899560-9899611)
chr6 (138-205)||(28944243-28944310)
chr6 (125-191)||(19048229-19048295)
chr6 (137-193)||(1292879-1292935)
chr6 (140-172)||(13119207-13119239)
chr6 (139-191)||(29836157-29836209)
[»] scaffold0006 (1 HSPs)
scaffold0006 (141-252)||(93633-93743)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 140 - 404
Target Start/End: Original strand, 14903806 - 14904070
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  14903806 ggcttaattaatgatttggtcccttaagttatttgttggttacattttgatcccataagttattaacgttacgttttggtcccctaacttatagtccgtt 14903905  T
Q  240 agccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcattaaatccagaatttcaacaaaattcaccaccttcgtc 339  Q
    || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14903906 agtcaaataaatcatttccgttaaattgggtgaaaatctattaatcttcatccctttcatcattaaatccagaatttcaacaaaattcaccaccttcatc 14904005  T
Q  340 aactctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14904006 aactctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 14904070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 140 - 291
Target Start/End: Original strand, 9114819 - 9114971
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||| | ||||    
T  9114819 ggcttaattaatgattttgtcccttaagttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaatttataattcgtt 9114918  T
Q  240 agccaaataaatcctttccgttaaattgggt-gaaaatctgttaatcttcatc 291  Q
    ||||||||||||||||||  |||||||  ||  |||| |||||||||||||||    
T  9114919 agccaaataaatcctttctattaaattttgtaaaaaaactgttaatcttcatc 9114971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 9116114 - 9115982
Alignment:
Q  159 tcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagccaaataaatcctttcc 258  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| | ||||||||| ||||||||| ||||||||| |||||    
T  9116114 tcctttaagttatttgttggttacattttggtctcataagttattaacgtttcgttttggtctcttaacttataatccgttagctaaataaatcatttcc 9116015  T
Q  259 gttaaattgggtgaaaatctgttaatcttcatc 291  Q
    ||||||||  || |||  |||||||||||||||    
T  9116014 gttaaattttgtaaaatactgttaatcttcatc 9115982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 139 - 291
Target Start/End: Complemental strand, 14904668 - 14904516
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| || || ||    
T  14904668 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatctgt 14904569  T
Q  239 tagccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatc 291  Q
    ||| |||||||||| |||| ||||||||   | |||| || ||||||||||||    
T  14904568 tagtcaaataaatcatttctgttaaattttataaaaaactattaatcttcatc 14904516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 17691008 - 17690887
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  || ||||| |||||||||||||| ||||||||||||||| ||||||||| ||  |    
T  17691008 aggcttaattaatgatttggtcccttaagttatttgttggttatgttctggtcccataagttattaacgttacgttttggtcccttaacttatattctat 17690909  T
Q  239 tagccaaataaatcctttccgt 260  Q
    ||||||||||||||||| ||||    
T  17690908 tagccaaataaatccttgccgt 17690887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 142 - 260
Target Start/End: Original strand, 17689738 - 17689855
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttag 241  Q
    |||||||||||||||||||| ||||||||||| ||| |||| ||| ||||||||||||||| ||| |||| |||| ||||| ||||||||| ||||||||    
T  17689738 cttaattaatgatttggtcccttaagttatttgttgattacgttt-ggtctcataagttataaacgttacattttagtcccttaacttatattccgttag 17689836  T
Q  242 ccaaataaatcctttccgt 260  Q
    | |||||||||||| ||||    
T  17689837 ctaaataaatccttgccgt 17689855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 37499510 - 37499443
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    ||||||||||||||||||||  |  ||||||||||| |||||||||||||||||||||||||||||||    
T  37499510 aaggcttaattaatgatttgacctcttaagttatttgttggttacattttggtctcataagttattaa 37499443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 30335308 - 30335237
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    |||||||||||||||| |||||||| ||||||||| ||  ||||| ||| |||||||||||||||||| ||||    
T  30335308 aggcttaattaatgatgtggtcctt-aagttatttgttacttacactttagtctcataagttattaacgttac 30335237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 37499178 - 37499233
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataa 197  Q
    |||||||||||||||||||| ||||||||||| ||| |||||||||  ||||||||    
T  37499178 cttaattaatgatttggtcccttaagttatttgttgcttacattttaatctcataa 37499233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 7204367 - 7204314
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  7204367 aaggcttaattactcatttggtccattaacttattttttggtttcgttttggtc 7204314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 11653150 - 11653113
Alignment:
Q  154 tttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  11653150 tttggtcctttaacttattttttggtttcattttggtc 11653113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 139 - 404
Target Start/End: Original strand, 28450749 - 28451014
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||| || |||||||||||||  |||||||||||||||||||||||||||||||    
T  28450749 aggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtccgt 28450848  T
Q  239 tagccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcattaaatccagaatttcaacaaaattcaccaccttcgt 338  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28450849 tagtcaaataaatcatttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcattaaatccagaatttcaacaaaattcaccaccttcat 28450948  T
Q  339 caactctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28450949 caactctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 28451014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 28451613 - 28451486
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || || ||    
T  28451613 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaacttgtaatctgt 28451514  T
Q  239 tagccaaataaatcctttccgttaaatt 266  Q
    ||| ||||||||||||||||||||||||    
T  28451513 tagtcaaataaatcctttccgttaaatt 28451486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 9451003 - 9450874
Alignment:
Q  131 taaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaactta 230  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||| |    
T  9451003 taaaattaaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactca 9450904  T
Q  231 tagtccgttagccaaataaatcctttccgt 260  Q
    || || ||||||||||||||||||| ||||    
T  9450903 tactctgttagccaaataaatccttgccgt 9450874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 9449714 - 9449835
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |||| | ||| ||| || ||    
T  9449714 aggcttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagttattaacgttacgttttgatcccttgactcatactctgt 9449813  T
Q  239 tagccaaataaatcctttccgt 260  Q
    ||||||| ||||||||| ||||    
T  9449814 tagccaagtaaatccttaccgt 9449835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 4437678 - 4437793
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    ||||||||||||||| |||||||| |||| |||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||  ||| ||| | || |    
T  4437678 aaggcttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagttagactctg 4437777  T
Q  238 ttagccaaataaatcc 253  Q
    ||||||||||||||||    
T  4437778 ttagccaaataaatcc 4437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 12585492 - 12585382
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttag 241  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||||| ||| |||   |  |||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagtatatgttag 12585393  T
Q  242 ccaaataaatc 252  Q
    |||||||||||    
T  12585392 ccaaataaatc 12585382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 9268023 - 9268137
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||  ||||  ||||||||| ||| |||   |  |||    
T  9268023 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagtatttgtt 9268122  T
Q  240 agccaaataaatcct 254  Q
    |||||||||||||||    
T  9268123 agccaaataaatcct 9268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 10468816 - 10468702
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||  ||||||||  ||| |||   || | |    
T  10468816 ggcttaattaatcatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagtatctgct 10468717  T
Q  240 agccaaataaatcct 254  Q
    |||||||||||||||    
T  10468716 agccaaataaatcct 10468702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 45667232 - 45667302
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttac 45667302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 3991011 - 3990897
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    |||||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||  ||||||||| ||| |||   ||  ||    
T  3991011 ggcttaattattgatttggtcccttaagttaattgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttaatatctatt 3990912  T
Q  240 agccaaataaatcct 254  Q
    |||||||||||||||    
T  3990911 agccaaataaatcct 3990897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 17931285 - 17931401
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtcc 236  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||||||| ||||    ||||||| ||| ||| | |||    
T  17931285 taaggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaacgttacaaaatggtcccttaagttacactcc 17931384  T
Q  237 gttagccaaataaatcc 253  Q
    || |||||| |||||||    
T  17931385 gtcagccaattaaatcc 17931401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 25225793 - 25225861
Alignment:
Q  143 ttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttggtctcataagttattaacgttac 25225861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 49028599 - 49028487
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||  ||||  ||||||||| ||| |||   |  |||    
T  49028599 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagtatttgtt 49028500  T
Q  240 agccaaataaatc 252  Q
    |||||||||||||    
T  49028499 agccaaataaatc 49028487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 253
Target Start/End: Complemental strand, 4439107 - 4438996
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttag 241  Q
    ||||||||||||  |||||| | ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| | ||| ||| | || |||||    
T  4439107 cttaattaatgacgtggtccctaaagttatttgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaagttagactctgttag 4439008  T
Q  242 ccaaataaatcc 253  Q
      ||||||||||    
T  4439007 ttaaataaatcc 4438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 10286398 - 10286481
Alignment:
Q  128 acataaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||| |||||||||| ||||    
T  10286398 acatagaaataaggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcccattagttattaacgttac 10286481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 52677553 - 52677666
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtta 240  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||| ||||  ||||||||  ||| |||   |  ||||    
T  52677553 gcttaattaattatttggtcccttaagttatttgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagtatatgtta 52677652  T
Q  241 gccaaataaatcct 254  Q
    ||||||||||||||    
T  52677653 gccaaataaatcct 52677666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 12585158 - 12585229
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||||||  |||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  12585158 ggcttaattaatgacgtggtcccttaagttatttgttgattacattttagtctcataagttattaacattac 12585229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 16067666 - 16067576
Alignment:
Q  132 aaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccct 224  Q
    |||| |||| |||||||||||||   ||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||  |||||||||||    
T  16067666 aaaaataagccttaattaatgata--gtcctttaaattatttgttggttacattttagtctcataagttattaacgttacaatttggtcccct 16067576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 17932211 - 17932146
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||||||    
T  17932211 ggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaa 17932146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 12315855 - 12315915
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagtt 200  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||    
T  12315855 ggcttaattaatgatttggtcctttaagttatttgtaggttacaatttggtcccataagtt 12315915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 52677889 - 52677823
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||| ||||||||||| |||||| ||| ||||||| ||||||||||||| |||||||||||||||||    
T  52677889 aggcataattaatgatgtggtcccttaggttatttgttggttacattttagtctcataagttattaa 52677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 10202681 - 10202749
Alignment:
Q  143 ttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||||||| |||||||| ||||||  |||||||||||||||| ||||| |||||||| ||||    
T  10202681 ttaattaatgatttgatcctttaaattatttgctggttacattttggtcccataaattattaacgttac 10202749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 21325765 - 21325689
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttg 217  Q
    ||||||||||||||||| ||  |||| |||||| ||||||||||||| ||| ||| |||||||||| ||||||||||    
T  21325765 gcttaattaatgatttgatctcttaaattatttgttggttacattttagtcacattagttattaacgttacgttttg 21325689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 49028262 - 49028345
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||| ||||| ||||| |||||| ||||||||||| ||||||||||||| ||| ||||| |||||||| ||||  |||||||||    
T  49028262 aggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccc 49028345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 10468480 - 10468562
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||||||||| |||| |||||| ||||||||||| ||||||||||||| |||   |||||| ||||| ||||  |||||||||    
T  10468480 ggcttaattactgatgtggtcccttaagttatttgttggttacattttagtcatctaagtttttaacgttacaatttggtccc 10468562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 53892253 - 53892317
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaac 206  Q
    ||||||||||||||||||   ||||||||||| | ||||||| || |||| ||||||||||||||    
T  53892253 cttaattaatgatttggtttcttaagttatttataggttacaattgggtcccataagttattaac 53892317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 27509630 - 27509684
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  27509630 taaggcttaattactcatttggtcccttaacttattttttggtttcgttttggtc 27509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 622391 - 622346
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacatttt 187  Q
    ||||||||||||| || ||| ||||||||||| |||||||||||||    
T  622391 cttaattaatgatgtgatcccttaagttatttgttggttacatttt 622346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 21038119 - 21038195
Alignment:
Q  144 taattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcc 221  Q
    |||||||||||||||||| ||||||| ||| ||| ||| ||||||||   ||||||||||||| ||||  ||||||||    
T  21038119 taattaatgatttggtcc-ttaagttgtttgttgattatattttggttcaataagttattaacgttacaatttggtcc 21038195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 45667405 - 45667372
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattt 173  Q
    ||||||||||||||| ||||||||||||||||||    
T  45667405 ggcttaattaatgatgtggtcctttaagttattt 45667372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 32617656 - 32617604
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  32617656 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtc 32617604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 36098747 - 36098811
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaac 206  Q
    ||||||||||||| |||||  ||||||||||| ||||||| ||||| ||  ||||| ||||||||    
T  36098747 cttaattaatgatgtggtctcttaagttatttgttggttatattttagttccataaattattaac 36098811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 48207837 - 48207785
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctc 193  Q
    |||||||  ||| ||||||||||||| |||||||||| || ||||||||||||    
T  48207837 gcttaatatatgctttggtcctttaacttattttttgttttcattttggtctc 48207785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 139 - 404
Target Start/End: Complemental strand, 10536864 - 10536599
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||| || |||||||||||||  |||||||||||||||||||||||||||| ||    
T  10536864 aggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtctgt 10536765  T
Q  239 tagccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcattaaatccagaatttcaacaaaattcaccaccttcgt 338  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  10536764 tagtcaaataaatcatttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcattaaatccagaatttcaataaaattcaccaccttcat 10536665  T
Q  339 caactctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 404  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10536664 caactctattcattagctccattgaaaaatctaaaaacttcatcacctcccttcaacatcaaactc 10536599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 288
Target Start/End: Complemental strand, 32539520 - 32539374
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtta 240  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||||||| |||| ||||| ||||||||| |||||||    
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttacattttaatctcataagttattaacattacatttttgtcccttaacttataatccgtta 32539421  T
Q  241 gccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttc 288  Q
    |||||||||||| | ||  ||||||| |||||||||||||||||||||    
T  32539420 gccaaataaatcttatctcttaaatt-ggtgaaaatctgttaatcttc 32539374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 10535999 - 10536126
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| || |  ||    
T  10535999 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatatgt 10536098  T
Q  239 tagccaaataaatcctttccgttaaatt 266  Q
    ||| ||||||||||||||||||||||||    
T  10536099 tagtcaaataaatcctttccgttaaatt 10536126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 404
Target Start/End: Original strand, 32538347 - 32538497
Alignment:
Q  243 caaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcattaaatccagaatttcaacaaaattcaccaccttcgtcaac 342  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||||||  |         ||||||||||||||||||||||||||||||||| |||||    
T  32538347 caaataaattctttccgttaaattgg-tgaaaatatgttaatcttcatcgtta--------aaatccagaatttcaacaaaattcaccaccttcatcaac 32538437  T
Q  343 tctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 404  Q
    ||  |||||||| |||||   |||||  ||||||| |||| |||||||||||||||||||||    
T  32538438 tc--ttcatcagttccatcacaaaattaaaaaactccatcgcctcccttcaacaccaaactc 32538497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 18203391 - 18203321
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||||||||||||| ||||    
T  18203391 gcttaattaatgatttggtcccttaagttatttattggttatattttggttccataagttattaacgttac 18203321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 30906060 - 30905980
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    ||||||||||||| |||||  ||||||||||| ||||||||||||| ||| |||||||||||||| ||||  |||||||||    
T  30906060 cttaattaatgatgtggtctcttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtccc 30905980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 32538283 - 32538325
Alignment:
Q  164 taagttattttttggttacattttggtctcataagttattaac 206  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  32538283 taagttatttgttggttacattttgatctcataagttattaac 32538325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 18202773 - 18202838
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||||||||||| || | |||  ||||||||||| ||| ||||||||| |||||||||||||||||    
T  18202773 ggcttaattaataatgtagtctattaagttatttgttgattacattttcgtctcataagttattaa 18202838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 9237814 - 9237763
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||||||||| | ||||||||| |||| ||||||||||||||| ||||||||    
T  9237814 ggcttaattattcatttggtcccttaacttattttttggttacgttttggtc 9237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 10398764 - 10398705
Alignment:
Q  132 aaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||| ||||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  10398764 aaaattaaggcttaattactcatttggtcccttaacttattttttggtttcgttttggtc 10398705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 9237311 - 9237365
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctc 193  Q
    ||||||||||| |  |||||||| |||| ||||||||||||| ||||||||||||    
T  9237311 aggcttaattactcttttggtcccttaatttattttttggtttcattttggtctc 9237365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 30905397 - 30905443
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacatttt 187  Q
    ||||||||||||||||||||| |||| |||||| ||||||| |||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggttatatttt 30905443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 5881406 - 5881459
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctc 193  Q
    |||||||||| |  |||| |||||||| ||||||||||||| ||||||||||||    
T  5881406 ggcttaattactcttttgatcctttaatttattttttggtttcattttggtctc 5881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 139 - 404
Target Start/End: Complemental strand, 18471843 - 18471589
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| || ||    
T  18471843 aggcttagttaatgatttggtcccttaagttatctgttggttacattttggtctcataagttattaacattatattttggtcccttaacttataatctgt 18471744  T
Q  239 tagccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatccctttcatcatt-aaatccagaatttcaacaaaattcaccaccttcg 337  Q
    |||||||||||||| |||||||||||||  || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||       
T  18471743 tagccaaataaatcatttccgttaaattttgtaaaaatctgttaatcttcatccccttcatcattaaaatccagaatttcaacaaaattcaccatct--- 18471647  T
Q  338 tcaactctattcatcagctccattgaaaaatctaaaaacttcatcacctcccttcaacaccaaactc 404  Q
             |||||| |||||||   |||||| ||||||||||||||||||||||||||||||||||    
T  18471646 ---------ttcatcggctccatcacaaaatccaaaaacttcatcacctcccttcaacaccaaactc 18471589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 8328197 - 8328345
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttag 241  Q
    |||||||||||| | ||||| ||||||||||| || |||| |||||||||||| ||||||||||| ||||||||| ||||| ||||||||| |  |||||    
T  8328197 cttaattaatgaatcggtcccttaagttatttattagttagattttggtctcacaagttattaacgttacgttttagtcccttaacttataatatgttag 8328296  T
Q  242 ccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcat 290  Q
    |||||||||||||||||||||||||  || ||||  |||||||||||||    
T  8328297 ccaaataaatcctttccgttaaattttgtaaaaaattgttaatcttcat 8328345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 287
Target Start/End: Original strand, 18470138 - 18470286
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||||| || | |||| |||||| ||||||||||||||| | |||||||||||||  ||| ||||||||||| ||||||||| || ||    
T  18470138 aggcttaattaatgattttgtgccttaaattatttgttggttacattttggccacataagttattaatgttaggttttggtcccttaacttataatctgt 18470237  T
Q  239 tagccaaataaatcctttccgttaaattgggtgaaaatctgttaatctt 287  Q
    ||| ||||||||||||||||||||||||   | |||| |||||||||||    
T  18470238 tagtcaaataaatcctttccgttaaattttataaaaaactgttaatctt 18470286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 291
Target Start/End: Complemental strand, 8342731 - 8342595
Alignment:
Q  143 ttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagc 242  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||            || ||| |||||    
T  8342731 ttaattaatgaattggtccattaagttattttttggttacactttggtctcataagttactaacattacgttttgg------------taatccattagc 8342644  T
Q  243 caaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatc 291  Q
    |||||||||| |||||||||||||  || |||| |||||||||||||||    
T  8342643 caaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatc 8342595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 4264977 - 4265056
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtc 220  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||  |||||||    
T  4264977 gcttaattaatgatgtggtcttttaagttattttttggtgacattttagtctcataagttattaacattacaatttggtc 4265056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 8329115 - 8329038
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggt 219  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  8329115 gcttaattaatgaattggtc-tttaagttatttgttggttacattttggtctcaaaagttattaacgttacgttttggt 8329038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 8905640 - 8905705
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  8905640 ggcttaatcaatgatttggtctcttaagttatttgttggttacattttggtctcataagttattaa 8905705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 4265313 - 4265198
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| |||||||| || | |||||||||||| || |||||||||||||| ||||  ||||||||  ||| |||   || ||    
T  4265313 aggcttaattaatgatttggtcccttaagttagttgtcggttacattttgatcccataagttattaacgttacaatttggtccattaagttagtatctgt 4265214  T
Q  239 tagccaaataaatcct 254  Q
    | ||||||||||||||    
T  4265213 ttgccaaataaatcct 4265198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 8594089 - 8594176
Alignment:
Q  167 gttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagccaaataaatcct 254  Q
    ||||||| ||| ||| ||||||||| |||||||| ||||||||||||||||||||| |||||| || |  ||||||||| ||||||||    
T  8594089 gttatttgttgattatattttggtcccataagttcttaacattacgttttggtcccttaacttgtaatttgttagccaattaaatcct 8594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 25749467 - 25749400
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaac 206  Q
    ||||||||||||| || || ||| ||||||||||| ||||||||| ||| ||||||||||||||||||    
T  25749467 aggcttaattaattatgtgttcccttaagttatttgttggttacaatttagtctcataagttattaac 25749400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 8341930 - 8341983
Alignment:
Q  238 ttagccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatc 291  Q
    ||||||||||||||| |||||||||||||  || |||| |||||||||||||||    
T  8341930 ttagccaaataaatcatttccgttaaattttgtaaaaaactgttaatcttcatc 8341983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 22207462 - 22207516
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||||| |  ||||||||||||| ||||||||||||| | ||||||||    
T  22207462 taaggcttaattactcttttggtcctttaacttattttttggtttcgttttggtc 22207516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 8735739 - 8735792
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggt 190  Q
    ||||||||||||| |  ||||||||||||| ||||||||||||| | |||||||    
T  8735739 taaggcttaattactcttttggtcctttaacttattttttggtttcgttttggt 8735792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 19070011 - 19069959
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| |  |||||||| |||| ||||||||||||| ||||||||||    
T  19070011 aggcttaattacttttttggtcccttaacttattttttggtttcattttggtc 19069959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 140 - 291
Target Start/End: Original strand, 4733304 - 4733455
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtt 239  Q
    |||||||||||||||||| ||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||    
T  4733304 ggcttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaatttataatccgtt 4733403  T
Q  240 agccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatc 291  Q
    |||||||||||||||||  ||||||||  || |||| |||||||||||||||    
T  4733404 agccaaataaatcctttatgttaaattttgtaaaaaactgttaatcttcatc 4733455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 139 - 291
Target Start/End: Complemental strand, 4734289 - 4734137
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||  ||||||||||||| ||||||||||||||| ||||||||| || ||    
T  4734289 aggcttaattaatgaattggtcccttaagttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaacttataatctgt 4734190  T
Q  239 tagccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatc 291  Q
    ||||||||||||||||||||||||||||  || |||  |||||||| ||||||    
T  4734189 tagccaaataaatcctttccgttaaattttgtaaaatactgttaatattcatc 4734137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 14159204 - 14159326
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||| ||| || |    
T  14159204 aaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctg 14159303  T
Q  238 ttagccaaataaatcctttccgt 260  Q
    |||||||||||||||||| ||||    
T  14159304 ttagccaaataaatccttgccgt 14159326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 14160493 - 14160372
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||| | ||| ||| || ||    
T  14160493 aggcttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttgactcatactctgt 14160394  T
Q  239 tagccaaataaatcctttccgt 260  Q
    ||||||| ||||||||| ||||    
T  14160393 tagccaagtaaatccttaccgt 14160372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 4410712 - 4410599
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| | ||||||||||||  ||| |||||||||| ||| ||| | || ||    
T  4410712 aggcttaattaatgatttggtcccttaagttatttgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttagactctgt 4410613  T
Q  239 tagccaaataaatc 252  Q
    ||||||||||||||    
T  4410612 tagccaaataaatc 4410599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 38695226 - 38695110
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||  ||||||||| ||| |||   |  |    
T  38695226 aaggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaacgttacaatttggtcccttaagttagtatttg 38695127  T
Q  238 ttagccaaataaatcct 254  Q
    |||||||||||||||||    
T  38695126 ttagccaaataaatcct 38695110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 4409164 - 4409274
Alignment:
Q  144 taattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagcc 243  Q
    |||||||||||||||||  |||| |||||| || |||||| |||||||||||||||||||||| ||||||||||||||| ||| ||| | |  |||||||    
T  4409164 taattaatgatttggtctcttaaattatttgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaagttaaattatgttagcc 4409263  T
Q  244 aaataaatcct 254  Q
    || ||||||||    
T  4409264 aagtaaatcct 4409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 18166633 - 18166715
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||| ||||  |||||||||    
T  18166633 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatctcataagttattaacgttacaatttggtccc 18166715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 42963105 - 42963033
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  42963105 aggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtctcataagttattaacgttac 42963033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 42962767 - 42962882
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||| ||||||| |||||| ||||||| |||||||||| | |||| ||||  ||||||||| ||| |||   |  ||    
T  42962767 aggcttaattaatgatttggtcccttaggttatttgttggttgcattttgatctcataagtgactaacgttacaatttggtcccttaagttagtatatgt 42962866  T
Q  239 tagccaaataaatcct 254  Q
    ||||||||||||||||    
T  42962867 tagccaaataaatcct 42962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 18171417 - 18171335
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcc 221  Q
    |||||||||||||||| |||||| |||| |||||| ||||||||||||| ||| ||||||||||||| |||||  ||||||||    
T  18171417 aggcttaattaatgatatggtcccttaaattatttgttggttacattttagtcccataagttattaaaattacaatttggtcc 18171335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 38694887 - 38694970
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||| ||||| ||||| |||||| ||||||||||| ||||||||||||| ||| ||||| |||||||| ||||  |||||||||    
T  38694887 aggcctaattgatgatgtggtcccttaagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccc 38694970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 34128343 - 34128271
Alignment:
Q  183 attttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagccaaataaatcctt 255  Q
    |||||| |||||||| ||| |||||||||||||| ||||| ||| ||||| || ||||| |||||||||||||    
T  34128343 attttgatctcataacttaataacattacgttttagtcccttaatttatactctgttagtcaaataaatcctt 34128271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 39110070 - 39110163
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaaca-ttacgttttggtcccctaacttat 231  Q
    |||||||||||| | ||||||||| |||| ||||||||||||| |||||||||| | |||  |||||| | || |||||||||||| ||||||||    
T  39110070 aaggcttaattactcatttggtcccttaacttattttttggtttcattttggtcccttaa-ctattaaaagtttcgttttggtcccttaacttat 39110163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 23461231 - 23461268
Alignment:
Q  154 tttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  23461231 tttggtcctttaacttattttttggtttcattttggtc 23461268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 39110484 - 39110431
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  39110484 aaggcttaattactcatttggtccattaacttattttttggtttcgttttggtc 39110431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 7182349 - 7182401
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  7182349 aggcttaattactcatttggtccattaacttattttttggtttcgttttggtc 7182401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 36099292 - 36099344
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  36099292 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtc 36099344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 45001052 - 45001104
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  45001052 aggcttaattactcatttggtcccttaacttattttttggtttcgttttggtc 45001104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 9379929 - 9380056
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||  || ||||||||||| ||||||||||||||| ||||||||| |  ||    
T  9379929 aggcttaattaatgaattggtcccttaagttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaacttataatatgt 9380028  T
Q  239 tagccaaataaatcctttccgttaaatt 266  Q
    ||||||||||||||||||||||||||||    
T  9380029 tagccaaataaatcctttccgttaaatt 9380056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 9380788 - 9380638
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtta 240  Q
    ||||||||||||| ||| ||| ||||||||||| |||||||||||||| || |||||||||||||  ||||||||||||||| | ||||||| |  ||||    
T  9380788 gcttaattaatgaattgatcccttaagttatttgttggttacattttgatcccataagttattaatgttacgttttggtcccttcacttataatatgtta 9380689  T
Q  241 gccaaataaatcctttccgttaaattgggtgaaaatctgttaatcttcatc 291  Q
    | ||||||||||||| ||||||||||  || |||| |||||||||||||||    
T  9380688 gtcaaataaatccttcccgttaaattttgtaaaaaactgttaatcttcatc 9380638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 34634067 - 34634181
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||| |||||||||  ||| ||| | || ||    
T  34634067 aggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttagactctgt 34634166  T
Q  239 tagccaaataaatcc 253  Q
    ||| |||||||||||    
T  34634167 tagtcaaataaatcc 34634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 1501169 - 1501052
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||| ||||||||| ||||| ||| ||||||||||| |||||| |||||||||| ||||| |||||||| |||| |||||||||| ||| ||||| ||||    
T  1501169 aaggtttaattaatcatttgatcccttaagttatttattggtttcattttggtcccataaattattaacgttacattttggtcccttaagttatattccg 1501070  T
Q  238 ttagccaaataaatcctt 255  Q
    |||| |||||||||||||    
T  1501069 ttagtcaaataaatcctt 1501052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 23322435 - 23322320
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||| ||||  ||||||||| ||| |||   |  ||    
T  23322435 aggcttaattaatgatttggtcccttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatatgt 23322336  T
Q  239 tagccaaataaatcct 254  Q
    ||||||||||||||||    
T  23322335 tagccaaataaatcct 23322320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 43183230 - 43183312
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||  |||||||||    
T  43183230 ggcttaattaataatttggtcccttaagttatttgttggttacattttggtcccataaattattaacattacaatttggtccc 43183312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 42792945 - 42793030
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    ||||||||||||||||||||||||  ||||||||||| |||||| |||||||||| ||||| |||||||  ||||  |||||||||    
T  42792945 taaggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataaattattaatgttacaatttggtccc 42793030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 5841214 - 5841142
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||||||||| ||||| |||||||| ||||    
T  5841214 aggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataaattattaacgttac 5841142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 23322097 - 23322180
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||||||||||||||| | |||  ||||||||||| ||||||||||||| ||| |||||||||||||  ||||  |||||||||    
T  23322097 aggcttaattaatgatgtagtctattaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccc 23322180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 25088419 - 25088518
Alignment:
Q  155 ttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagccaaataaatcct 254  Q
    |||||||  |||||||||| ||||||||||||||||| ||||| |||||||| ||||  ||||||||| ||  |||   || ||||||||||||||||||    
T  25088419 ttggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcct 25088518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 25146388 - 25146487
Alignment:
Q  155 ttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttagccaaataaatcct 254  Q
    |||||||  |||||||||| ||||||||||||||||| ||||| |||||||| ||||  ||||||||| ||  |||   || ||||||||||||||||||    
T  25146388 ttggtcccgtaagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcct 25146487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 15933664 - 15933602
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagtta 201  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||| ||| | |||||||    
T  15933664 aggcttaattcatgatttggtcccttaagttatttgttggttacattttagtcccttaagtta 15933602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 20244587 - 20244517
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacatta 210  Q
    ||||||||||||||||| ||   |||| |||||| ||||||||||||||||| ||||| ||||||||||||    
T  20244587 ggcttaattaatgattttgttacttaaattatttgttggttacattttggtcccataaattattaacatta 20244517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 5840880 - 5840948
Alignment:
Q  143 ttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    |||||||||||| |||||| ||||||||||| ||||||| ||||| ||  |||||||||||||| ||||    
T  5840880 ttaattaatgatgtggtcccttaagttatttgttggttatattttagtgccataagttattaacgttac 5840948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 15933355 - 15933427
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||| |||||| |||||| |||  |||||| ||||||| ||||| |||||||||||||||||| ||||    
T  15933355 aggcttaatcaatgatgtggtcccttatattatttgttggttatattttagtctcataagttattaacgttac 15933427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25089123 - 25089061
Alignment:
Q  143 ttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||||||||||  |||| | ||||||||||| ||||||| ||||| || ||||||||||||||    
T  25089123 ttaattaatgacgtggttccttaagttatttattggttatattttagtgtcataagttattaa 25089061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25147092 - 25147030
Alignment:
Q  143 ttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||||||||||  |||| | ||||||||||| ||||||| ||||| || ||||||||||||||    
T  25147092 ttaattaatgacgtggttccttaagttatttattggttatattttagtgtcataagttattaa 25147030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 43476331 - 43476294
Alignment:
Q  154 tttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  43476331 tttggtcctttaacttattttttggtttcattttggtc 43476294  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 137 - 260
Target Start/End: Original strand, 16907927 - 16908050
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtcc 236  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||| ||||| ||| ||     
T  16907927 taaggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttatgttttggtcccttaactcatactct 16908026  T
Q  237 gttagccaaataaatcctttccgt 260  Q
    |||||||||||||||  |||||||    
T  16908027 gttagccaaataaattatttccgt 16908050  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 46684095 - 46684210
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtcc 236  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||  |||    
T  46684095 taaggcttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagttattaacattacgttttggtcccttaagttatcttcc 46684194  T
Q  237 gttagccaaataaatc 252  Q
    || |||||||||||||    
T  46684195 gtcagccaaataaatc 46684210  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 46685602 - 46685488
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||| ||||||||| | ||||| ||| ||||  |||||    
T  46685602 aggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataagttattatcattacgttatagtcccttaagttatcttccgt 46685503  T
Q  239 tagccaaataaatcc 253  Q
     | ||||||||||||    
T  46685502 caaccaaataaatcc 46685488  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 24107149 - 24107265
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||| | ||| |||   || |    
T  24107149 aaggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtttctg 24107248  T
Q  238 ttagccaaataaatcct 254  Q
    |||||||||||||||||    
T  24107249 ttagccaaataaatcct 24107265  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 27864798 - 27864913
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||| ||| |||   |  ||    
T  27864798 aggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttagtatttgt 27864897  T
Q  239 tagccaaataaatcct 254  Q
    ||||||||||||||||    
T  27864898 tagccaaataaatcct 27864913  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 31596825 - 31596752
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  31596825 aaggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttattaacgttac 31596752  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 27865135 - 27865053
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcc 221  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||| |||||||||||||| ||||  ||||||||    
T  27865135 aggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaacgttacaatttggtcc 27865053  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 38758943 - 38758881
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttat 202  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  38758943 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttat 38758881  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 14812426 - 14812498
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||| ||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||| ||||    
T  14812426 aggcttaatcaatgatttgatcatttaagttattttttagttacattttggtcccataagttattaacgttac 14812498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 19860826 - 19860712
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||| ||||||||||||||  || |||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||||  ||| ||| | ||      
T  19860826 aaggtttaattaatgatttcatc-tttaagttatttattggttacattttggtctca-aagttattaacattacaatttggtcctttaagttaaaatcta 19860729  T
Q  238 ttagccaaataaatcct 254  Q
    |||||||||||||||||    
T  19860728 ttagccaaataaatcct 19860712  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 24107489 - 24107405
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||||||| ||| |||||||||||||| ||||  |||||||||    
T  24107489 aaggcttaattaatgatgtggtccattaagttaattgttggttacattttagtcccataagttattaacgttacaatttggtccc 24107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 3171488 - 3171571
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||| |||||||||||||  ||||  |||||||||    
T  3171488 aggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccc 3171571  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 19860490 - 19860572
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcc 221  Q
    |||||||||||||||| |||||  ||||||||||| ||||||||||||| ||| |||||||||||||| ||||  ||||||||    
T  19860490 aggcttaattaatgatgtggtctattaagttatttattggttacattttagtcccataagttattaacgttacaatttggtcc 19860572  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 18025880 - 18025941
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagtta 201  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  18025880 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 18025941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 54446362 - 54446271
Alignment:
Q  130 ataaaactaaggcttaattaatgatttggtcctttaagttattttttggttaca-ttttggtctcataagttattaacattacgttttggtc 220  Q
    |||||| | ||| ||||||||||||||||||| ||||||||||| || |||||| ||||||||  ||||||||||||||||||  |||||||    
T  54446362 ataaaatttaggtttaattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagttattaacattacaatttggtc 54446271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 11422379 - 11422428
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttgg 189  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  11422379 ggcttaattaatgatttggtcccttaagttatttgttggttacattttgg 11422428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 38758607 - 38758679
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattac 211  Q
    ||||||||||| |||| | |||| ||||||||||| ||||||||||||| ||| |||||||||||||| ||||    
T  38758607 aggcttaattagtgatgttgtcccttaagttatttgttggttacattttagtcccataagttattaacgttac 38758679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 3171823 - 3171775
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacatttt 187  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  3171823 aggcttaattaatgatttggtcccttaagttatttgtcggttacatttt 3171775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 10817863 - 10817769
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaaca-ttacgttttggtcccctaacttat 231  Q
    ||||||||||||  | ||||||||| |||| ||||||||||||| |||||||||||| ||| ||||||| | || ||||| |||||| ||||||||    
T  10817863 taaggcttaattcctcatttggtcccttaacttattttttggtttcattttggtctcttaa-ttattaaaagtttcgtttcggtcccttaacttat 10817769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 30385180 - 30385232
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||    
T  30385180 aggcttaattactcatttggtcccttaacttattttttggtttcattttggtc 30385232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 42592399 - 42592451
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||    
T  42592399 aggcttaattactcatttggtcccttaacttattttttggtttcattttggtc 42592451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 18026163 - 18026116
Alignment:
Q  164 taagttattttttggttacattttggtctcataagttattaacattac 211  Q
    |||||||||| ||||||||||||| ||| |||||||||||||| ||||    
T  18026163 taagttatttgttggttacattttagtcccataagttattaacgttac 18026116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 21792228 - 21792299
Alignment:
Q  151 tgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    |||| |||||| |||| |||||  ||||||||||||| ||| |||||||||||||| ||||  |||||||||    
T  21792228 tgatgtggtcccttaatttattggttggttacattttagtcccataagttattaacgttacaatttggtccc 21792299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 22976980 - 22977034
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctc 193  Q
    ||||||||||| |  ||||||||||||| ||||||||||||| | ||||||||||    
T  22976980 aggcttaattacttttttggtcctttaacttattttttggtttcgttttggtctc 22977034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 18024567 - 18024616
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||||||| | ||||||||| |||| ||||||||||||| ||||||||||    
T  18024567 cttaattactcatttggtcccttaacttattttttggtttcattttggtc 18024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 18024976 - 18024884
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaaca-ttacgttttggtcccctaacttat 231  Q
    ||||||||||| | ||||||||| |||| ||||||||||||| | |||||||| | |||  |||||| | || |||||||||||| ||||||||    
T  18024976 aggcttaattactaatttggtcccttaacttattttttggtttcgttttggtcccttaa-ctattaaaagtttcgttttggtcccttaacttat 18024884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 12062066 - 12062014
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggt 190  Q
    |||||||||||| |  ||||||||||||| ||||||||||||| | |||||||    
T  12062066 aaggcttaattactcttttggtcctttaacttattttttggtttcgttttggt 12062014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 24360758 - 24360702
Alignment:
Q  201 attaacattacgttttggtcccctaacttatagtccgttagccaaataaatcctttc 257  Q
    ||||| ||||||||||| |||| ||||||| | || |||||||||||||||| ||||    
T  24360758 attaatattacgttttgatcccttaacttacactcagttagccaaataaatcatttc 24360702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 25629430 - 25629482
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | ||||||||| |||| |||||||||| |||| ||||||||    
T  25629430 aggcttaattactcatttggtcccttaacttattttttgattacgttttggtc 25629482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 54446022 - 54446102
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    ||||||||||||| |||||  | ||||||||| ||| |||||||||  ||  ||||||||||||| ||||  |||||||||    
T  54446022 cttaattaatgatgtggtctctaaagttatttgttgattacattttaatcctataagttattaacgttacaatttggtccc 54446102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 19897 - 20009
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgttag 241  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||| ||| |||   || |||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagtatctgttag 19996  T
Q  242 ccaaataaatcct 254  Q
    |||||||||||||    
T  19997 ccaaataaatcct 20009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 20232 - 20153
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtccc 222  Q
    ||||||||||||| |||||||| ||||||||| ||||||| |||||  |  ||||| |||||||| ||||  |||||||||    
T  20232 cttaattaatgatgtggtcctt-aagttatttgttggttatattttaattccataatttattaacgttacaatttggtccc 20153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 266966 - 266844
Alignment:
Q  130 ataaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaactt 229  Q
    |||||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||   ||||||||| ||| ||    
T  266966 ataaaatttaggtttaattaatgatttggtcctttaagttatttgttggttacattttggtcacataagttattaaccttataatttggtcccttaagtt 266867  T
Q  230 atagtccgttagccaaataaatc 252  Q
    |   || ||||||||||||||||    
T  266866 agtatctgttagccaaataaatc 266844  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 3720052 - 3720165
Alignment:
Q  142 cttaattaatgatttggtcctttaagttattttttgg-ttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtta 240  Q
    |||||||||||||||||||| ||||||||||||||   ||||||||||||| ||||| |||||| |||||||| |||||||| |||||| || | |||||    
T  3720052 cttaattaatgatttggtcccttaagttattttttttattacattttggtcccataatttattagcattacgtgttggtcccttaacttttaattcgtta 3720151  T
Q  241 gccaaataaatcct 254  Q
    ||||| ||||||||    
T  3720152 gccaattaaatcct 3720165  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 3659289 - 3659174
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||  ||||||||| ||| |||   |  |    
T  3659289 aaggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagtatttg 3659191  T
Q  238 ttagccaaataaatcct 254  Q
    |||||||||||||||||    
T  3659190 ttagccaaataaatcct 3659174  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 5367752 - 5367637
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccg 237  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||| ||||  ||||||||| ||| |||   |  |    
T  5367752 aaggcttaattaatgatttggtcctt-aagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatttg 5367654  T
Q  238 ttagccaaataaatcct 254  Q
    |||||||||||||||||    
T  5367653 ttagccaaataaatcct 5367637  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 8286787 - 8286901
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||| | ||||| |||||| |||| |||| || || ||| ||||  || ||    
T  8286787 aggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccttaagtaattaacgttacattttagttccttaagttatcttctgt 8286886  T
Q  239 tagccaaataaatcc 253  Q
     | ||||||||||||    
T  8286887 caaccaaataaatcc 8286901  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 8287502 - 8287389
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgt 238  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||   ||| |  | ||| |||| |||||||||| ||| ||||  |||||    
T  8287502 aggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcctttaactattcaacgttacattttggtcccttaagttatcttccgt 8287403  T
Q  239 tagccaaataaatc 252  Q
     | |||||||||||    
T  8287402 caaccaaataaatc 8287389  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 3658951 - 3659017
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    ||||||||||| |||| |||||| ||||||||||| ||||||||| ||| ||| |||||||||||||    
T  3658951 aggcttaattactgatgtggtcccttaagttatttattggttacagtttagtcccataagttattaa 3659017  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 11626679 - 11626642
Alignment:
Q  102 attatgtagaattgaactaatatttaacataaaactaa 139  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11626679 attatgtagaattgaactaatatttaacataaaactaa 11626642  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 5367451 - 5367495
Alignment:
Q  176 tggttacattttggtctcataagttattaacattacgttttggtc 220  Q
    |||||||||||| |||||||||||||||||||||||  |||||||    
T  5367451 tggttacattttagtctcataagttattaacattacaatttggtc 5367495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 30859911 - 30859971
Alignment:
Q  131 taaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||| ||||||||||||| | ||||||||| |||| ||||||||||||| | ||||||||    
T  30859911 taaaaataaggcttaattactcatttggtcccttaacttattttttggtttcgttttggtc 30859971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 9899560 - 9899611
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||||||||| | ||||||||| |||| ||||||||||||| ||||||||||    
T  9899560 ggcttaattactcatttggtcccttaacttattttttggtttcattttggtc 9899611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 28944243 - 28944310
Alignment:
Q  138 aaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaa 205  Q
    |||||||||||||| || || ||| |||||| |||| |||||||||||||  |||| |||||||||||    
T  28944243 aaggcttaattaatcatctgctcccttaagtcatttgttggttacattttaatctcgtaagttattaa 28944310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 19048229 - 19048295
Alignment:
Q  125 ttaacataaaactaaggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    |||| ||||||  |||||||||||| |  |||||||| |||| ||||||||||||| ||||||||||    
T  19048229 ttaaaataaaataaaggcttaattacttttttggtcccttaacttattttttggtttcattttggtc 19048295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 1292935 - 1292879
Alignment:
Q  137 taaggcttaattaatgatttggtcctttaagttattttttggttacattttggtctc 193  Q
    ||||||||||||| |  ||||||| ||||| ||||||||||||| | ||||||||||    
T  1292935 taaggcttaattactcttttggtcttttaacttattttttggtttcgttttggtctc 1292879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 13119239 - 13119207
Alignment:
Q  140 ggcttaattaatgatttggtcctttaagttatt 172  Q
    |||||||||||||||||||||| ||||||||||    
T  13119239 ggcttaattaatgatttggtcccttaagttatt 13119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 29836209 - 29836157
Alignment:
Q  139 aggcttaattaatgatttggtcctttaagttattttttggttacattttggtc 191  Q
    ||||||||||| | | ||||||| |||| ||||||||||||||| ||||||||    
T  29836209 aggcttaattattcagttggtcccttaacttattttttggttacgttttggtc 29836157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 93633 - 93743
Alignment:
Q  141 gcttaattaatgatttggtcctttaagttattttttggttacattttggtctcataagttattaacattacgttttggtcccctaacttatagtccgtta 240  Q
    ||||||||||||||||| ||||| ||||||||| || |||||||||||||| ||||| |||||||| ||||  ||| ||||| ||| |||   |  ||||    
T  93633 gcttaattaatgatttgatcctt-aagttatttgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagttactatttgtta 93731  T
Q  241 gccaaataaatc 252  Q
    ||||||||||||    
T  93732 gccaaataaatc 93743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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