View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9511_low_3 (Length: 358)

Name: NF9511_low_3
Description: NF9511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9511_low_3
NF9511_low_3
[»] chr1 (4 HSPs)
chr1 (1-338)||(30272422-30272761)
chr1 (10-139)||(31141945-31142075)
chr1 (1-47)||(30270472-30270518)
chr1 (42-81)||(34470027-34470066)
[»] scaffold0856 (2 HSPs)
scaffold0856 (189-338)||(4719-4872)
scaffold0856 (1-140)||(4885-5025)
[»] chr8 (2 HSPs)
chr8 (42-139)||(21634803-21634901)
chr8 (64-130)||(5515537-5515604)
[»] chr7 (9 HSPs)
chr7 (42-139)||(32089262-32089360)
chr7 (42-139)||(32096735-32096833)
chr7 (42-139)||(39128489-39128587)
chr7 (42-139)||(39478458-39478556)
chr7 (42-139)||(41706626-41706724)
chr7 (42-139)||(41812162-41812260)
chr7 (42-139)||(32093019-32093117)
chr7 (42-139)||(32087907-32088005)
chr7 (38-78)||(22785386-22785426)
[»] chr6 (4 HSPs)
chr6 (42-139)||(26217231-26217329)
chr6 (42-119)||(7618947-7619025)
chr6 (42-96)||(11187906-11187960)
chr6 (52-120)||(18871931-18872001)
[»] chr3 (5 HSPs)
chr3 (42-139)||(38044518-38044616)
chr3 (42-139)||(48837988-48838086)
chr3 (52-130)||(50152365-50152444)
chr3 (52-130)||(50903997-50904076)
chr3 (53-130)||(50916160-50916242)
[»] chr2 (1 HSPs)
chr2 (60-130)||(32271350-32271421)
[»] chr4 (3 HSPs)
chr4 (59-95)||(7772341-7772377)
chr4 (59-95)||(7777949-7777985)
chr4 (59-95)||(7792741-7792777)
[»] chr5 (1 HSPs)
chr5 (53-84)||(18352651-18352682)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 30272422 - 30272761
Alignment:
Q  1 tatttagcttttatataacacggaaataccttcttctattatcccttcgatgacatccgataaaattggaatgatacagagaagattagcatggccatgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272422 tatttagcttttatataacacggaaataccttcttctattatcccttcaatgacatccgataaaattggaatgatacagagaagattagcatggccatgc 30272521  T
Q  101 gcaagaatgacacgcacaaatcaagaaatgacccaaattannnnnnnnnnnnnnnncttccttcatcaattcgttcac-tgcgtcttcctttgattccct 199  Q
    |||| ||||||||||||||||| |||||||||||||||||                |||||||||||||||||||||| |||||||||||||||||||||    
T  30272522 gcaacaatgacacgcacaaatcgagaaatgacccaaattattttttacttttttttcttccttcatcaattcgttcacctgcgtcttcctttgattccct 30272621  T
Q  200 tcgttggctgcggttattggcttcttttttcatcatcccatgtgcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatcttactcatg 299  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272622 tcgttggctgcggttattggcttcttttttcatcatcccatgagcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatcttactcatg 30272721  T
Q  300 gatgcatagtgtctcactatcata-ttttggttctctgtg 338  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30272722 gatgcatagtgtctcactatcatatttttggttctctgtg 30272761  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 31142075 - 31141945
Alignment:
Q  10 tttatataacacggaaataccttcttctattatcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaat 108  Q
    |||||||||| || |||| |  ||||||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| ||    
T  31142075 tttatataacgcgcaaatgctctcttctattgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggat 31141976  T
Q  109 gacacgcacaaatcaagaaatgacccaaatt 139  Q
    |||||||||||||| |||||||  |||||||    
T  31141975 gacacgcacaaatcgagaaatggtccaaatt 31141945  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30270518 - 30270472
Alignment:
Q  1 tatttagcttttatataacacggaaataccttcttctattatccctt 47  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  30270518 tatttagcttttatataacacggaaataccttcttctagtatccctt 30270472  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 34470027 - 34470066
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagag 81  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  34470027 tcccttcggggacatccgataaaattggaatgatacagag 34470066  T

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Target: scaffold0856 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 4872 - 4719
Alignment:
Q  189 tttgattcccttcgttggctgcggttattggcttcttttttcatcatc---ccatgtgcttcgctatgatgtttgaaaacaaacttgactggcttttcac 285  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4872 tttgattcccttcgttggctgcagttattggcttcttttttcatcatcatcccatgtgcttcgctatgatgttcgaaaacaaacttgactggcttttcac 4773  T
Q  286 taatcttactcatggatgcatagtgtctcactatcata-ttttggttctctgtg 338  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4772 taatcttactcatggatgcatagtgtctcactatcatatttttggttctctgtg 4719  T

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Target: scaffold0856; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 5025 - 4885
Alignment:
Q  1 tatttagcttttatataacacggaaataccttcttctattatcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatg 99  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  5025 tatttagcttttatataacacgaaaataccttcttctagtatcccttcggggacattcgataaaattggaatgatacagagaagatcagcatggcccatg 4926  T
Q  100 cgcaagaatgacacgcacaaatcaagaaatgacccaaatta 140  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  4925 cgcaaggatgacacgcacaaatcgagaaatgacccaaatta 4885  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 21634901 - 21634803
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  21634901 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 21634803  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 5515537 - 5515604
Alignment:
Q  64 aattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatg 130  Q
    |||||||| |||||||||||||||||||||| || |||||||  |||||||||||||||| |||||||    
T  5515537 aattggaacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatg 5515604  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 32089360 - 32089262
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  32089360 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 32089262  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 32096833 - 32096735
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  32096833 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 32096735  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 39128587 - 39128489
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  39128587 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 39128489  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 39478458 - 39478556
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  39478458 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 39478556  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 41706724 - 41706626
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  41706724 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 41706626  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 41812162 - 41812260
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  41812162 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 41812260  T

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Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 32093117 - 32093019
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||| |||||||  |||||||    
T  32093117 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtccaaatt 32093019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 32088005 - 32087907
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||| ||||||||||||| |||||||||||||||| ||||| || ||| |||| |||||||||||||||| |||||||  |||||||    
T  32088005 tcccttcggggacatctgataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaaatt 32087907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 22785426 - 22785386
Alignment:
Q  38 attatcccttcgatgacatccgataaaattggaatgataca 78  Q
    |||||||||| || |||||||||||||||||||| ||||||    
T  22785426 attatccctttgaagacatccgataaaattggaacgataca 22785386  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 26217329 - 26217231
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  26217329 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 26217231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 7619025 - 7618947
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatg-gccatgcgcaagaatgacacgcacaa 119  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||||||||    
T  7619025 tcccttcggggacatccgataaaattggaatgatacagagaagattagcatgatccatgcgcaaagatgacacgcacaa 7618947  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 11187906 - 11187960
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatggcc 96  Q
    ||||||||| ||| ||||  |||||||||| ||||||||||||||||||||||||    
T  11187906 tcccttcgaggacgtccggaaaaattggaacgatacagagaagattagcatggcc 11187960  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 18872001 - 18871931
Alignment:
Q  52 gacatccgataaaattggaatgatacagagaagattagcatgg--ccatgcgcaagaatgacacgcacaaa 120  Q
    |||||| |||||| ||| ||||||||||| |||||||||||||  || |||||||  ||||||||||||||    
T  18872001 gacatctgataaagttgaaatgatacagacaagattagcatggccccttgcgcaaagatgacacgcacaaa 18871931  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 38044616 - 38044518
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  38044616 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 38044518  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 48837988 - 48838086
Alignment:
Q  42 tcccttcgatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatgacccaaatt 139  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||  |||||||    
T  48837988 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaatt 48838086  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 50152365 - 50152444
Alignment:
Q  52 gacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatg 130  Q
    |||||| ||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||    
T  50152365 gacatctgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 50152444  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 50903997 - 50904076
Alignment:
Q  52 gacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaagaatgacacgcacaaatcaagaaatg 130  Q
    |||||||||||||||||||| ||||||||||||||||||| || || |||||||| ||||||||||||| || |||||||    
T  50903997 gacatccgataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaattcgagaaatg 50904076  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 50916242 - 50916160
Alignment:
Q  53 acatccgataaaattggaatgatacagagaagattagcatgg-----ccatgcgcaagaatgacacgcacaaatcaagaaatg 130  Q
    ||||||||||||||||||| |||| |||||||||| ||||||     || ||| |||| |||||||||||||||  |||||||    
T  50916242 acatccgataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcacaaattgagaaatg 50916160  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 32271421 - 32271350
Alignment:
Q  60 ataaaattggaatgatacagagaagattagcatggcca-tgcgcaagaatgacacgcacaaatcaagaaatg 130  Q
    |||||||||||| |||||| ||||||||| |||||||  |||||||| |||||||||||||||| |||||||    
T  32271421 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 32271350  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 7772377 - 7772341
Alignment:
Q  59 gataaaattggaatgatacagagaagattagcatggc 95  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7772377 gataaaattggaacgatacagagaagattagcatggc 7772341  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 7777985 - 7777949
Alignment:
Q  59 gataaaattggaatgatacagagaagattagcatggc 95  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7777985 gataaaattggaacgatacagagaagattagcatggc 7777949  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 7792777 - 7792741
Alignment:
Q  59 gataaaattggaatgatacagagaagattagcatggc 95  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7792777 gataaaattggaacgatatagagaagattagcatggc 7792741  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 18352651 - 18352682
Alignment:
Q  53 acatccgataaaattggaatgatacagagaag 84  Q
    ||||||||||||||||||||||||||||||||    
T  18352651 acatccgataaaattggaatgatacagagaag 18352682  T

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