View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9511_low_5 (Length: 331)
Name: NF9511_low_5
Description: NF9511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9511_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 43088157 - 43088465
Alignment:
| Q |
19 |
ataagaggtccaattacaaaaataaaaattagtttatgcaattgcacgcaaatgcataatgacgttgaataaaaggtagtgtccaatggaaggtgaacta |
118 |
Q |
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| T |
43088157 |
ataagaggtccaattacaaaaataaaaattagtttatgcaattgcacgcaaatgcataatgactctgaataaaaggtagtgtccaatggaaggtgaacta |
43088256 |
T |
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| Q |
119 |
cggcggaaacaagcattcgtgtagtaaggtaaatgcataatnnnnnnngtttaactaattaacaaatgcctataaataacttgactaaccaaataaaaga |
218 |
Q |
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| T |
43088257 |
ccgcggaaacaagcattcgtgtagtaaagtaaatgcataataaaaaaagtttaactgattaacaaatgcctaaaaataacttgactaaccaaataaaaga |
43088356 |
T |
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| Q |
219 |
agtagaactgttatgaaaataaatatagaaaacgattgaagttaactactcttacatttgactataataatgaatgaaaatgtacggaaacaaattccac |
318 |
Q |
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| T |
43088357 |
agtagaactgttatgaaaataaatatagaaaacgattgaagttaactactcttacatttgactataataatgaatgaaaatgtacggaaacaaattccat |
43088456 |
T |
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| Q |
319 |
caccaaact |
327 |
Q |
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||||||||| |
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| T |
43088457 |
caccaaact |
43088465 |
T |
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