View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9511_low_8 (Length: 288)
Name: NF9511_low_8
Description: NF9511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9511_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 6350319 - 6350059
Alignment:
| Q |
20 |
tagaggtcacttgacacatcttatagaaagcttaccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaa |
119 |
Q |
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| T |
6350319 |
tagaggtcacttgacacatcttatagaaagcttaccgcgaccacaaagttgtttggtttgggtgatttgatatggtttcaagctattttcacatagagaa |
6350220 |
T |
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| Q |
120 |
aattcttcaatttgttgcaaagatcaaacaagcacaaactcacccaaagactcacaaaattactcagggacactaaaaactttgtatgactaattatcat |
219 |
Q |
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| T |
6350219 |
aattcttcaatttgttgcaaagatcaaacaagcacaaactcacccaaagactcacaaaattactcagggacactaaaaactttgtatgactaattatcat |
6350120 |
T |
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| Q |
220 |
cacataccaaaccttatgtcgacgtgtaaagaaagagagaaattaaatcacattaacaccaaa |
282 |
Q |
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| T |
6350119 |
cacataccaaaccttatgtcgacgtggaaagaaa--gagaaattaaatcacattaacaccaaa |
6350059 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 8987276 - 8987244
Alignment:
| Q |
57 |
cgaccacaaagttgtttggtttgggtgatttga |
89 |
Q |
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| T |
8987276 |
cgaccacatagttgtttggtttgggtgatttga |
8987244 |
T |
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