View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9511_low_9 (Length: 240)
Name: NF9511_low_9
Description: NF9511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9511_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 49538841 - 49538630
Alignment:
| Q |
11 |
tttggtgtttggttggaggcagcggcttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtg |
110 |
Q |
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| T |
49538841 |
tttggtgtttggttggaggcagcggcttggatcttttagaatttgttgtctcatatcgttaacaaatagagttgcaattcgtaatggctctattagtgtg |
49538742 |
T |
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| Q |
111 |
ctctagtcaattaactaagcataatcaaatcctccactagtaacctagtaaagtcacaatgtaagtcatatacatttttaatctagaccactacaaggaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49538741 |
ctctagtcaattaactaagcataatcaaatcctccactagtaacctagtatattcacaatgtaagtcatatacatttttaatctagaccactacaaggaa |
49538642 |
T |
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| Q |
211 |
aaagggtagtaa |
222 |
Q |
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|||||||||||| |
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| T |
49538641 |
aaagggtagtaa |
49538630 |
T |
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