View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9512_low_1 (Length: 212)

Name: NF9512_low_1
Description: NF9512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9512_low_1
NF9512_low_1
[»] chr2 (4 HSPs)
chr2 (67-182)||(2314205-2314320)
chr2 (111-182)||(25643326-25643397)
chr2 (111-178)||(15582313-15582380)
chr2 (111-169)||(25658648-25658707)
[»] chr3 (4 HSPs)
chr3 (72-175)||(33508947-33509050)
chr3 (95-179)||(48050594-48050678)
chr3 (110-182)||(53654059-53654131)
chr3 (130-177)||(29636687-29636734)
[»] chr4 (6 HSPs)
chr4 (95-173)||(24914165-24914242)
chr4 (96-181)||(26559549-26559634)
chr4 (111-182)||(11563188-11563259)
chr4 (95-173)||(25362052-25362129)
chr4 (95-177)||(35850394-35850476)
chr4 (124-182)||(56464091-56464148)
[»] chr5 (3 HSPs)
chr5 (93-182)||(3375444-3375533)
chr5 (93-182)||(3400507-3400596)
chr5 (95-179)||(33019748-33019832)
[»] chr7 (1 HSPs)
chr7 (111-177)||(13280621-13280685)
[»] chr8 (2 HSPs)
chr8 (110-167)||(36036879-36036936)
chr8 (123-182)||(11623920-11623979)
[»] chr1 (1 HSPs)
chr1 (111-178)||(46264007-46264072)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 2314320 - 2314205
Alignment:
Q  67 aataactaaaaggaagtgattgttagtaagttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccat 166  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2314320 aataactaaaaggaagggattgttagtaagttctttgtcaactcatttgtaatttactgtgatgttataaagggagttcaaattcatagccttccaccat 2314221  T
Q  167 cccaaacccttccgtc 182  Q
    ||||||||||||||||    
T  2314220 cccaaacccttccgtc 2314205  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 25643397 - 25643326
Alignment:
Q  111 atttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||    
T  25643397 atttataatttattgtgatgttataaagagagttcaaattcgtagtcttccaccatcccaaactcttccgtc 25643326  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 15582313 - 15582380
Alignment:
Q  111 atttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttc 178  Q
    |||| ||||||||| |||||||| |||||||||||||||   |||| ||| |||||||| ||||||||    
T  15582313 atttataatttattatgatgttaaaaagggagttcaaatctctagcattctaccatcccgaacccttc 15582380  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 25658648 - 25658707
Alignment:
Q  111 atttgtaatttattgtgatgttataaag-ggagttcaaattcatagccttccaccatccc 169  Q
    |||| ||| ||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  25658648 atttataaattattgtgatgttataaaatggagttcaaattattagccttccaccatccc 25658707  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 33509050 - 33508947
Alignment:
Q  72 ctaaaaggaagtgattgttagtaagttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaa 171  Q
    ||||||||| ||| |||||||||||||||| ||| |||||||| |||||||||  |||||| |||| ||||||||||||||||| |||||||||||||||    
T  33509050 ctaaaaggaggtggttgttagtaagttcttcgtcgactcatttataatttattaagatgttgtaaatggagttcaaattcatagtcttccaccatcccaa 33508951  T
Q  172 accc 175  Q
    ||||    
T  33508950 accc 33508947  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 48050594 - 48050678
Alignment:
Q  95 agttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttcc 179  Q
    ||||||||||  || ||||| |||||||| ||||||||| |||||  |||||||||  ||||||||||||||||||||| |||||    
T  48050594 agttctttgttgacccatttataatttatcgtgatgttaaaaaggaggttcaaatttctagccttccaccatcccaaactcttcc 48050678  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 53654059 - 53654131
Alignment:
Q  110 catttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    ||||| ||||||||||||||||||||| ||||||| |||| | |||||| || |||||||||| |||||||||    
T  53654059 catttataatttattgtgatgttataatgggagtttaaatccttagcctccctccatcccaaaaccttccgtc 53654131  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 29636734 - 29636687
Alignment:
Q  130 gttataaagggagttcaaattcatagccttccaccatcccaaaccctt 177  Q
    ||||||| |||||||||||| | ||| |||||||||||||||||||||    
T  29636734 gttataatgggagttcaaatccgtagtcttccaccatcccaaaccctt 29636687  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 24914165 - 24914242
Alignment:
Q  95 agttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaac 173  Q
    |||||||||| ||| ||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  24914165 agttctttgttaacccatttataatttattgtgaggttataaagagagttcaaattc-tagccttccaccatcccaaac 24914242  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 26559549 - 26559634
Alignment:
Q  96 gttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgt 181  Q
    |||||||||  |||| ||| |||||| ||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  26559549 gttctttgttgactcgtttataattttttgtgattttataaagggagttcaaatgcctagccttccaccatctcaaacccttccgt 26559634  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 11563259 - 11563188
Alignment:
Q  111 atttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    |||| |||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||    
T  11563259 atttataatttatcgtgatgttataaagggagttcaaaatcaaagcctttcaccatcccaaactcttccgtc 11563188  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 25362129 - 25362052
Alignment:
Q  95 agttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaac 173  Q
    |||||||| | ||||||||| ||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||    
T  25362129 agttctttattaactcatttataatttattgtgaggttataaagagagttcaaattc-tagtcttccaccatcccaaac 25362052  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 35850476 - 35850394
Alignment:
Q  95 agttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaaccctt 177  Q
    ||||||||||  || ||||| ||||| |||| |||||||||||||||||| |||| |||| |||||||||||| |||||||||    
T  35850476 agttctttgttgacccatttataattcattgggatgttataaagggagtttaaatccataaccttccaccatcgcaaaccctt 35850394  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 56464091 - 56464148
Alignment:
Q  124 tgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    ||||||||||||| |||||||||||| | |||||||| ||||||||||||| |||||||    
T  56464091 tgtgatgttataa-gggagttcaaatccctagccttctaccatcccaaacctttccgtc 56464148  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 3375444 - 3375533
Alignment:
Q  93 taagttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    |||||||| |||  |||||| | || ||||||  ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  3375444 taagttctatgttgactcatgtatagtttattacgatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtc 3375533  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 3400507 - 3400596
Alignment:
Q  93 taagttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    |||||||| |||  |||||| | || ||||||  ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  3400507 taagttctatgttgactcatgtatagtttattacgatgttataaagggagttcaaatccttagtcttccaccatcccaaacccttccgtc 3400596  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 33019832 - 33019748
Alignment:
Q  95 agttctttgtcaactcatttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttcc 179  Q
    ||||||||||  |||||||| |||||||| ||||||||||||||| | ||| ||||| || | ||| ||||||||||||| ||||    
T  33019832 agttctttgttgactcatttataatttatcgtgatgttataaaggaaattcgaattcctaacattctaccatcccaaacctttcc 33019748  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 13280621 - 13280685
Alignment:
Q  111 atttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaaccctt 177  Q
    |||| ||||||||||||||||||  |||||||||||||| | || ||||||||||||||||||||||    
T  13280621 atttataatttattgtgatgtta--aagggagttcaaatccctacccttccaccatcccaaaccctt 13280685  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 36036936 - 36036879
Alignment:
Q  110 catttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatc 167  Q
    ||||| || |||||| | ||||||||| |||||||||||||| |||||||||||||||    
T  36036936 catttatagtttattctaatgttataatgggagttcaaattcctagccttccaccatc 36036879  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 11623979 - 11623920
Alignment:
Q  123 ttgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttccgtc 182  Q
    ||||||||||||||||  ||||||||| | ||||||| || ||| |||||||||||||||    
T  11623979 ttgtgatgttataaagaaagttcaaatccgtagcctttcagcattccaaacccttccgtc 11623920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 46264072 - 46264007
Alignment:
Q  111 atttgtaatttattgtgatgttataaagggagttcaaattcatagccttccaccatcccaaacccttc 178  Q
    |||| ||||||||||||||||||||||| |||||  | ||| ||||||||||  ||||||||| ||||    
T  46264072 atttataatttattgtgatgttataaagagagtt--agttcctagccttccataatcccaaactcttc 46264007  T

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