View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9513_high_1 (Length: 460)
Name: NF9513_high_1
Description: NF9513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9513_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 69 - 442
Target Start/End: Complemental strand, 250395 - 250021
Alignment:
| Q |
69 |
agagagaga-aagacaaggtagaagaaaggaagtcaaaatacgacagacataaatattgactagactcacgtgttgcttctcttctactggccccaccac |
167 |
Q |
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| T |
250395 |
agagagagagaagacaaggtagaagaaaggaagtcaaaatacgacagacataaacattgactagactcacgcgttgcttctcttctactggccccaccac |
250296 |
T |
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| Q |
168 |
catatatatgctttacttcacattgggtctctctcttgtgatgatggtcatgatatatttcaacaactaaaatcacacatgatcattgcattacatcttt |
267 |
Q |
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| T |
250295 |
catatatatgctttacttcacattgggtctctctcttgtgatgatggtcatgatatatttcaacaactaaaatcacacatgatcattgtattacatcttt |
250196 |
T |
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| Q |
268 |
ctaaatcgaagatatgtaatataaaatttgggtttgaatattaatnnnnnnngtttggattgggctagtatacttgcaatagtcacaccaagccttgaac |
367 |
Q |
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| T |
250195 |
ctaaattgaagatatgtaatataaaatttgggtttgaatattaataaaataagtttggattgggctagtatacttgcaatagtcataccaagccttgaac |
250096 |
T |
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| Q |
368 |
aagttcgcccttgttcgtcattgtaaaaacacatgtgttgagagaaccatttaaatgtcaagtcttgtgcacatc |
442 |
Q |
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| T |
250095 |
aagttcgcccttgttcgtcattgtaaaaacacatgtgttgagagaaccatttaaatgtcaagtcttgtgcacatc |
250021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 250475 - 250419
Alignment:
| Q |
16 |
agacagataaatcaaactacacatattcattctttctttctgagttttaagaaagagag |
74 |
Q |
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| T |
250475 |
agacagataaatcaaactacacatattcattctttctttctgag--ttaagaaagagag |
250419 |
T |
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