View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9513_low_11 (Length: 240)
Name: NF9513_low_11
Description: NF9513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9513_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1409742 - 1409964
Alignment:
| Q |
1 |
tatttctaagaatccctacataaaattaagcgcacgtgtatttatggatggacgaaatgagatcattttaatttgttatttaaaatctacttcacttttt |
100 |
Q |
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| T |
1409742 |
tatttctaagaatccctagataaaattaagcgcacgtgtatttatggatggacgaaatgagatcattttaatttgttatttaaaatctacttcacttttt |
1409841 |
T |
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| Q |
101 |
ggatacagcctcttttgtgctaagaattgtattgagtcagaggaacaacacaaaaaatgttatagtaaagaaaggaaagagggcaaaagaggatgcaaaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1409842 |
ggatacagactcttttgtgctaagaattgtattgagtcagaggaacaacacaaaaaatgttatagtaaagaaaggaaagagggcaaaagaggatgcaaaa |
1409941 |
T |
|
| Q |
201 |
atgttacacccctattgtggagg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1409942 |
atgttacacccctattgtggagg |
1409964 |
T |
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