View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9513_low_3 (Length: 380)

Name: NF9513_low_3
Description: NF9513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9513_low_3
NF9513_low_3
[»] chr2 (32 HSPs)
chr2 (103-251)||(42368317-42368465)
chr2 (247-359)||(42369621-42369733)
chr2 (276-359)||(42370908-42370991)
chr2 (103-222)||(17179260-17179380)
chr2 (3-50)||(42368217-42368264)
chr2 (103-177)||(17179093-17179167)
chr2 (306-359)||(8536174-8536227)
chr2 (103-168)||(22653036-22653101)
chr2 (129-215)||(12852880-12852967)
chr2 (103-179)||(30202892-30202968)
chr2 (146-219)||(14573860-14573934)
chr2 (3-50)||(36422630-36422677)
chr2 (103-177)||(5435192-5435266)
chr2 (103-177)||(27264582-27264656)
chr2 (144-178)||(33837805-33837839)
chr2 (116-177)||(22900974-22901035)
chr2 (144-214)||(6706921-6706992)
chr2 (103-179)||(22900225-22900301)
chr2 (145-177)||(41313318-41313350)
chr2 (107-216)||(27657760-27657870)
chr2 (144-179)||(33836800-33836835)
chr2 (144-178)||(4630134-4630168)
chr2 (129-179)||(7038367-7038417)
chr2 (103-177)||(27262746-27262820)
chr2 (103-177)||(43015572-43015646)
chr2 (306-359)||(8536844-8536897)
chr2 (129-178)||(12854139-12854188)
chr2 (103-214)||(21541056-21541168)
chr2 (147-179)||(3255931-3255963)
chr2 (308-356)||(4976466-4976514)
chr2 (308-356)||(4994373-4994421)
chr2 (103-179)||(21545078-21545154)
[»] chr8 (27 HSPs)
chr8 (105-170)||(8502285-8502350)
chr8 (106-177)||(14433824-14433895)
chr8 (113-172)||(24068368-24068427)
chr8 (306-359)||(38686340-38686393)
chr8 (144-179)||(6843786-6843821)
chr8 (308-359)||(38687013-38687064)
chr8 (103-177)||(3612592-3612666)
chr8 (103-177)||(4675887-4675961)
chr8 (129-179)||(14820224-14820274)
chr8 (106-170)||(33510233-33510297)
chr8 (103-216)||(3271153-3271267)
chr8 (106-177)||(4675785-4675856)
chr8 (103-170)||(14433662-14433729)
chr8 (103-170)||(41178679-41178746)
chr8 (103-177)||(3272034-3272108)
chr8 (103-177)||(3612497-3612571)
chr8 (103-177)||(29441649-29441723)
chr8 (103-177)||(30865134-30865208)
chr8 (103-177)||(40102864-40102938)
chr8 (306-359)||(33801536-33801589)
chr8 (306-359)||(33802331-33802384)
chr8 (127-176)||(37472437-37472486)
chr8 (129-170)||(38591042-38591083)
chr8 (129-170)||(41867951-41867992)
chr8 (103-171)||(15989279-15989347)
chr8 (275-359)||(43971284-43971368)
chr8 (308-356)||(43972047-43972095)
[»] chr7 (34 HSPs)
chr7 (110-179)||(19848850-19848919)
chr7 (103-179)||(21171495-21171571)
chr7 (112-177)||(18801248-18801313)
chr7 (144-219)||(34557387-34557463)
chr7 (306-359)||(46757461-46757514)
chr7 (116-172)||(17288242-17288298)
chr7 (103-170)||(1903870-1903937)
chr7 (113-172)||(33459562-33459621)
chr7 (146-223)||(38778963-38779041)
chr7 (113-172)||(45721785-45721844)
chr7 (269-347)||(32548643-32548721)
chr7 (114-172)||(41516364-41516422)
chr7 (144-215)||(41616618-41616690)
chr7 (103-179)||(1904029-1904105)
chr7 (144-214)||(36673886-36673957)
chr7 (268-359)||(12732246-12732337)
chr7 (103-170)||(21171335-21171402)
chr7 (103-220)||(43704597-43704715)
chr7 (103-177)||(6772864-6772938)
chr7 (103-177)||(8439901-8439975)
chr7 (112-170)||(25153698-25153756)
chr7 (103-177)||(29754695-29754769)
chr7 (103-177)||(33229440-33229514)
chr7 (103-177)||(35087971-35088045)
chr7 (149-179)||(36672854-36672884)
chr7 (103-177)||(37373668-37373742)
chr7 (144-178)||(41126271-41126305)
chr7 (103-177)||(47809595-47809669)
chr7 (113-170)||(132018-132075)
chr7 (9-50)||(18670419-18670460)
chr7 (129-170)||(19279647-19279688)
chr7 (103-172)||(35087874-35087943)
chr7 (103-179)||(28648321-28648397)
chr7 (144-172)||(38406056-38406084)
[»] chr5 (26 HSPs)
chr5 (103-179)||(19050780-19050856)
chr5 (103-179)||(8706049-8706125)
chr5 (103-170)||(15154076-15154143)
chr5 (269-359)||(4554657-4554747)
chr5 (103-170)||(641889-641956)
chr5 (144-179)||(15509226-15509261)
chr5 (106-177)||(38394715-38394786)
chr5 (144-178)||(32521718-32521752)
chr5 (103-177)||(37371192-37371266)
chr5 (144-214)||(4568024-4568095)
chr5 (129-177)||(18693731-18693779)
chr5 (113-172)||(224609-224668)
chr5 (144-179)||(22650678-22650713)
chr5 (269-359)||(26711568-26711659)
chr5 (269-359)||(26981305-26981396)
chr5 (103-177)||(1982745-1982819)
chr5 (103-177)||(5820692-5820766)
chr5 (103-177)||(6914821-6914895)
chr5 (103-177)||(32780091-32780165)
chr5 (103-177)||(37371090-37371164)
chr5 (113-170)||(223266-223323)
chr5 (127-172)||(12936135-12936180)
chr5 (127-172)||(12950293-12950338)
chr5 (144-177)||(20988723-20988756)
chr5 (129-177)||(7345425-7345473)
chr5 (129-177)||(21387670-21387718)
[»] chr3 (36 HSPs)
chr3 (113-176)||(48252967-48253030)
chr3 (112-176)||(26798924-26798988)
chr3 (144-179)||(53049087-53049122)
chr3 (144-220)||(48035374-48035451)
chr3 (144-215)||(32974273-32974345)
chr3 (144-212)||(48034007-48034075)
chr3 (103-179)||(2224903-2224979)
chr3 (144-214)||(32973134-32973205)
chr3 (144-214)||(39288489-39288560)
chr3 (144-214)||(52292589-52292660)
chr3 (144-214)||(53047892-53047963)
chr3 (144-214)||(53342711-53342782)
chr3 (144-179)||(5417098-5417133)
chr3 (129-172)||(8372651-8372694)
chr3 (129-172)||(10987688-10987731)
chr3 (144-179)||(11219461-11219496)
chr3 (144-179)||(40502265-40502300)
chr3 (113-172)||(47766970-47767028)
chr3 (103-216)||(51214175-51214289)
chr3 (144-179)||(52293573-52293608)
chr3 (144-179)||(52705358-52705393)
chr3 (103-177)||(12105392-12105466)
chr3 (103-177)||(30431408-30431482)
chr3 (103-177)||(30431507-30431581)
chr3 (144-178)||(39190774-39190808)
chr3 (103-177)||(54109631-54109705)
chr3 (129-179)||(54654001-54654051)
chr3 (144-177)||(1301065-1301098)
chr3 (144-177)||(11220708-11220741)
chr3 (306-359)||(15450262-15450315)
chr3 (129-170)||(51401386-51401427)
chr3 (129-170)||(53808358-53808399)
chr3 (144-177)||(55442627-55442660)
chr3 (144-177)||(55443600-55443633)
chr3 (105-177)||(46987461-46987533)
chr3 (147-179)||(48826833-48826865)
[»] chr4 (29 HSPs)
chr4 (103-218)||(39135519-39135635)
chr4 (113-172)||(46796045-46796104)
chr4 (306-359)||(50710375-50710428)
chr4 (103-170)||(23752056-23752123)
chr4 (263-346)||(33370846-33370929)
chr4 (268-338)||(232028-232098)
chr4 (103-177)||(26202395-26202469)
chr4 (127-176)||(1273466-1273515)
chr4 (306-359)||(6680300-6680353)
chr4 (306-359)||(53664249-53664302)
chr4 (144-214)||(937148-937219)
chr4 (287-359)||(6246802-6246874)
chr4 (144-176)||(52880848-52880880)
chr4 (144-179)||(526769-526804)
chr4 (113-176)||(3528224-3528287)
chr4 (144-179)||(12396924-12396959)
chr4 (129-172)||(15787537-15787580)
chr4 (103-170)||(26428854-26428921)
chr4 (128-179)||(28103520-28103571)
chr4 (113-176)||(38553963-38554026)
chr4 (144-179)||(52881980-52882015)
chr4 (103-177)||(26202293-26202367)
chr4 (103-177)||(34457577-34457651)
chr4 (129-170)||(33377399-33377440)
chr4 (129-170)||(37560334-37560375)
chr4 (127-176)||(40146656-40146705)
chr4 (9-50)||(44664242-44664283)
chr4 (144-172)||(21104360-21104388)
chr4 (103-175)||(32508460-32508532)
[»] chr1 (32 HSPs)
chr1 (103-178)||(40135346-40135421)
chr1 (113-176)||(50679840-50679903)
chr1 (103-177)||(20171171-20171245)
chr1 (103-177)||(25866579-25866653)
chr1 (103-179)||(38458117-38458193)
chr1 (103-170)||(25035398-25035465)
chr1 (103-170)||(25040611-25040678)
chr1 (147-220)||(26054887-26054960)
chr1 (129-179)||(26056182-26056232)
chr1 (144-177)||(1873904-1873937)
chr1 (144-177)||(34532752-34532785)
chr1 (144-214)||(2236808-2236879)
chr1 (144-214)||(35683050-35683121)
chr1 (269-356)||(31788237-31788324)
chr1 (144-179)||(48934272-48934307)
chr1 (144-179)||(48935160-48935195)
chr1 (144-178)||(1061360-1061394)
chr1 (129-179)||(3979348-3979398)
chr1 (103-177)||(27114716-27114790)
chr1 (103-177)||(33941350-33941424)
chr1 (103-177)||(52371766-52371840)
chr1 (129-170)||(13641297-13641338)
chr1 (129-170)||(25786008-25786049)
chr1 (112-177)||(32823491-32823556)
chr1 (151-214)||(35684259-35684323)
chr1 (147-179)||(9123452-9123484)
chr1 (114-170)||(9575251-9575307)
chr1 (327-359)||(11469723-11469755)
chr1 (327-359)||(31787536-31787568)
chr1 (129-177)||(32823576-32823624)
chr1 (113-177)||(39193614-39193678)
chr1 (144-176)||(52741522-52741554)
[»] chr6 (13 HSPs)
chr6 (144-216)||(13173030-13173103)
chr6 (144-179)||(2138687-2138722)
chr6 (144-179)||(26584087-26584122)
chr6 (144-179)||(8447252-8447287)
chr6 (144-179)||(8456056-8456091)
chr6 (129-176)||(9927640-9927687)
chr6 (103-220)||(12203280-12203398)
chr6 (144-179)||(28226468-28226503)
chr6 (103-177)||(17916478-17916552)
chr6 (103-177)||(21749811-21749885)
chr6 (144-177)||(19367750-19367783)
chr6 (129-170)||(22299938-22299979)
chr6 (144-177)||(28225457-28225490)
[»] scaffold0155 (1 HSPs)
scaffold0155 (144-214)||(5164-5235)
[»] scaffold0064 (1 HSPs)
scaffold0064 (103-170)||(20431-20498)
[»] scaffold0038 (2 HSPs)
scaffold0038 (144-179)||(26966-27001)
scaffold0038 (144-177)||(25955-25988)
[»] scaffold0007 (1 HSPs)
scaffold0007 (103-177)||(28165-28239)
[»] scaffold0002 (1 HSPs)
scaffold0002 (145-179)||(458511-458545)
[»] scaffold1974 (1 HSPs)
scaffold1974 (129-170)||(663-704)
[»] scaffold1878 (1 HSPs)
scaffold1878 (129-170)||(570-611)
[»] scaffold0290 (1 HSPs)
scaffold0290 (129-170)||(9513-9554)
[»] scaffold0189 (1 HSPs)
scaffold0189 (306-359)||(12817-12870)
[»] scaffold0071 (1 HSPs)
scaffold0071 (306-359)||(11876-11929)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 251
Target Start/End: Original strand, 42368317 - 42368465
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaaggaccaaagc 202  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||         |||||||||||| |    
T  42368317 gaccacttgggtaaacggagatatacttatgggaccaaatcgagacactttatagttaggggaccaaaatgaaatccaaaaataagttaaggaccaaatc 42368416  T
Q  203 atgtattaagccaaaaataattatataaaaccttcaatttgttgaagta 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42368417 atgtattaagccaaaaataattatataaaaccttcaatttgttgaagta 42368465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 42369621 - 42369733
Alignment:
Q  247 aagtaagtcaatataatttgatggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaa 346  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42369621 aagtacgtcaatataatttgatggtggggtttagtatggaaaaggaaagttgtttcaatccatgggaaagtaaatattagccattagataaagtagagaa 42369720  T
Q  347 cataattttatca 359  Q
    |||||||||||||    
T  42369721 cataattttatca 42369733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 359
Target Start/End: Complemental strand, 42370991 - 42370908
Alignment:
Q  276 tttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||| || ||||| |||||||   ||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||    
T  42370991 tttagtatgggaatggaaagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatca 42370908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 17179260 - 17179380
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    |||||||||| |||||||||||||||||| ||||| | || |||||| |||| ||||||||||||||| | |||| |         |||| |||||||||    
T  17179260 gaccacttggataaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaattgaaattcaaaaataagttaagggaccaaag 17179359  T
Q  202 catgtattaagccaaaaataa 222  Q
    |||||||||||||| ||||||    
T  17179360 catgtattaagccataaataa 17179380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 42368217 - 42368264
Alignment:
Q  3 aaaataagatacaggtggttcactgttatatacagtggacctacaatc 50  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  42368217 aaaattagatacaggtggttcactgttatatacagtggacttacaatc 42368264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 17179167 - 17179093
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||| |||| |||||||||||||||||| ||||| | || |||||| |||| ||||||||||||||| ||||||    
T  17179167 gaccagttggataaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaattaaaat 17179093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 8536174 - 8536227
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||  | ||||||||||||||||||||| |||||||||    
T  8536174 ccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatca 8536227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 22653036 - 22653101
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggacca 168  Q
    ||||| ||||||||||||||||||||||| ||||| | || |||||| |||| |||||||||||||    
T  22653036 gaccagttgggtaaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggacca 22653101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 12852967 - 12852880
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcca 215  Q
    ||||||||| | || ||||||||||||||||||||||||||||| ||||||         |||| |||||||||||||||||||||||    
T  12852967 ttatgggaccaaattgagacactttatagttaggggaccaaaatgaaatccaaaagtaagttaagggaccaaagcatgtattaagcca 12852880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 30202892 - 30202968
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||| |||||||||||||||||| ||||  | || |||||| |||| ||||||||||||||| | ||||||    
T  30202892 gaccacttggataaacggaggtatacttaagggatcaaattgagacagtttaaagttaggggaccaaattgaaatcc 30202968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 14573860 - 14573934
Alignment:
Q  146 gacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagccaaaaa 219  Q
    ||||||||||||||||||||||||||| ||||||         |||| |||||||||||||||||||||||||||    
T  14573860 gacactttatagttaggggaccaaaatgaaatccaaaaatatgttaagggaccaaagcatgtattaagccaaaaa 14573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 36422630 - 36422677
Alignment:
Q  3 aaaataagatacaggtggttcactgttatatacagtggacctacaatc 50  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  36422630 aaaattagataccggtggttcactattatatacagtggacctacaatc 36422677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 5435266 - 5435192
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  5435266 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaatgaaat 5435192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 27264582 - 27264656
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  27264582 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacaatttaaagttaagggaccaaaatgaaat 27264656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 33837805 - 33837839
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatc 178  Q
    |||||||||||||||||||||||||||||||||||    
T  33837805 gagacactttatagttaggggaccaaaataaaatc 33837839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 22900974 - 22901035
Alignment:
Q  116 aacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||||||||||| ||||| | || |||||| |||| ||||||||||||||| ||||||    
T  22900974 aacggaggtatacttaggggactaaattgagacagtttaaagttaggggaccaaattaaaat 22901035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 6706992 - 6706921
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  6706992 gagacactttatagttaggggaccaaaatgaaatccaaaaataagttaagggaccaaagcatgtattaagcc 6706921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 22900301 - 22900225
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||||||||||| | |||||||| | ||| | || |||||| |||| ||||||||||||||| | ||||||    
T  22900301 gaccacttgggtaaacggggatatacttaggagaccaaattgagacagtttaaagttaggggaccaaattgaaatcc 22900225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 41313318 - 41313350
Alignment:
Q  145 agacactttatagttaggggaccaaaataaaat 177  Q
    |||||||||||||||||||||||||||||||||    
T  41313318 agacactttatagttaggggaccaaaataaaat 41313350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 27657760 - 27657870
Alignment:
Q  107 acttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatg 205  Q
    |||| |||||||||||  ||||||| ||||| |  | |||||| |||| ||||| ||||||||||||||||||         |||| |||||||||||||    
T  27657760 actttggtaaacggagacatacttaagggaccaatttgagacaatttaaagttaagggaccaaaataaaatccaaaaataaattaagggaccaaagcatg 27657859  T
Q  206 tattaagccaa 216  Q
    |||||||||||    
T  27657860 tattaagccaa 27657870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 33836835 - 33836800
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33836835 gagacactttatagttaggggaccaaaatgaaatcc 33836800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 4630134 - 4630168
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatc 178  Q
    ||||||||||||||||||||||||||||| |||||    
T  4630134 gagacactttatagttaggggaccaaaatgaaatc 4630168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 7038367 - 7038417
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||| | || ||||||||||||||||| ||||||||||| ||||||    
T  7038367 ttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatcc 7038417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 27262820 - 27262746
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  27262820 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 27262746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 43015646 - 43015572
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| ||||||| |||||| | ||||||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  43015646 gaccacttaggtaaacagaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaatgaaat 43015572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 8536897 - 8536844
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||| ||||||||| ||  |||||||||||||||||||||||  ||||||||    
T  8536897 ccatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatca 8536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 12854139 - 12854188
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatc 178  Q
    ||||||||| | || ||||||||||||||||| ||||||||||| |||||    
T  12854139 ttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatc 12854188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 21541168 - 21541056
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    |||||||| |||||||||||  ||||||| ||||| |  | |||||| |||| ||||| ||||||||||| ||||||         |||| |||||||||    
T  21541168 gaccactttggtaaacggagagatacttaagggaccaatttgagacaatttaaagttaagggaccaaaatgaaatccaaaaattagttaagggaccaaag 21541069  T
Q  202 catgtattaagcc 214  Q
    |||||||||||||    
T  21541068 catgtattaagcc 21541056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 3255931 - 3255963
Alignment:
Q  147 acactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||||||||||||||||||| ||||||    
T  3255931 acactttatagttaggggaccaaaatgaaatcc 3255963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 4976514 - 4976466
Alignment:
Q  308 atgggaaagtaaatattagccattagataaagtagagaacataatttta 356  Q
    |||||||||| ||| ||| |||||||||||| ||||||||||| |||||    
T  4976514 atgggaaagttaattttaaccattagataaaatagagaacatactttta 4976466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 4994421 - 4994373
Alignment:
Q  308 atgggaaagtaaatattagccattagataaagtagagaacataatttta 356  Q
    |||||||||| ||| ||| |||||||||||| ||||||||||| |||||    
T  4994421 atgggaaagttaattttaaccattagataaaatagagaacatactttta 4994373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 21545078 - 21545154
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||| |||||||||||  ||||||| ||||| |  | |||||| |||| ||||| ||||||||||| ||||||    
T  21545078 gaccactttggtaaacggagagatacttaagggaccaatttgagacaatttaaagttaagggaccaaaatgaaatcc 21545154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 8502285 - 8502350
Alignment:
Q  105 ccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||||||||||||||||||||| ||||||| || |||||| |||| |||||||||||||||    
T  8502285 ccacttgggtaaacggaggtatacttaggggacaaaattgagacagtttaaagttaggggaccaaa 8502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 14433824 - 14433895
Alignment:
Q  106 cacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||||||||||||||||||||| ||||| | || |||||| |||| ||||||||||||||| ||||||    
T  14433824 cacttgggtaaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaattaaaat 14433895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 24068427 - 24068368
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||||| | ||||||||||| | || |||||||||||||||||||||||||||||    
T  24068427 gtaaacggaggaagacttatgggaccaaattgagacactttatagttaggggaccaaaat 24068368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 38686340 - 38686393
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||  |||||||||||||||||||||||  ||||||||    
T  38686340 ccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatca 38686393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 6843821 - 6843786
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  6843821 gagacactttatagttaggggaccaaaataaaatcc 6843786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 38687064 - 38687013
Alignment:
Q  308 atgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||   |||||||||||||||||||||| |||||||||    
T  38687064 atgggaaagtaaatattgatcattagataaagtagagaacatgattttatca 38687013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 3612592 - 3612666
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| | ||||||||||||||    
T  3612592 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacaatttaaagttaagagaccaaaataaaat 3612666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 4675887 - 4675961
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||||||||    
T  4675887 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaataaaat 4675961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 14820274 - 14820224
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||| | || ||||||||||||||||||||||||||| ||||||||    
T  14820274 ttatgggactaaattgagacactttatagttaggggaccaaattaaaatcc 14820224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 33510297 - 33510233
Alignment:
Q  106 cacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||||||||||||||||||||  |||| | || |||||| |||| |||||| ||||||||    
T  33510297 cacttgggtaaacggaggtatacttagaggaccaaattgagacagtttaaagttagaggaccaaa 33510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 3271267 - 3271153
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| |||| |         |||| |||||||||    
T  3271267 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacgatttaaagttaagggaccaaaatgaaattcaaaaataagttaagggaccaaag 3271168  T
Q  202 catgtattaagccaa 216  Q
    |||||||||||||||    
T  3271167 catgtattaagccaa 3271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 4675856 - 4675785
Alignment:
Q  106 cacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||| ||||| |||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||||||||    
T  4675856 cacttaggtaagcggaggtaaagttatgggaccaaattgagacaatttaaagttaagggaccaaaataaaat 4675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 14433729 - 14433662
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| |||| ||||| |||||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  14433729 gaccagttggataaacagaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaa 14433662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 41178679 - 41178746
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| |||| |||||||||||||||||| ||||  | || |||||| |||| |||||||||||||||    
T  41178679 gaccagttggataaacggaggtatacttacgggagcaaattgagacagtttaaagttaggggaccaaa 41178746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 3272034 - 3272108
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||| | | ||||||||||| || |||||  |||| ||||| ||||||||||| ||||    
T  3272034 gaccacttaggtaaacggaggcaaagttatgggacaaaattgagacggtttaaagttaagggaccaaaatgaaat 3272108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 3612571 - 3612497
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  3612571 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 3612497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 29441723 - 29441649
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||| || |||||||||||||| | ||||||||  | || |||||| |||| ||||| ||||||||||||||||    
T  29441723 gaccatttaggtaaacggaggtaaagttatgggattaaattgagacagtttaaagttaagggaccaaaataaaat 29441649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 30865134 - 30865208
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  30865134 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 30865208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 40102938 - 40102864
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  40102938 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 40102864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 33801536 - 33801589
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||| ||||||||||||  |||||| ||||||||||||||||  ||||||||    
T  33801536 ccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatca 33801589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 33802384 - 33802331
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||  |||||| ||||| ||||||||||  ||||||||    
T  33802384 ccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatca 33802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 37472486 - 37472437
Alignment:
Q  127 acttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||||| | || |||||||||||||||||| |||||||| |||||    
T  37472486 acttatgggaccaaattgagacactttatagttagaggaccaaattaaaa 37472437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 38591042 - 38591083
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  38591042 ttatgggaccaaattgagacactttatagttaggggaccaaa 38591083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 41867951 - 41867992
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  41867951 ttatgggaccaaattgagacactttatagttaggggaccaaa 41867992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 15989279 - 15989347
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaa 171  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||    
T  15989279 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaa 15989347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 43971284 - 43971368
Alignment:
Q  275 gtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||| |  || |||||||   |||||||||||  ||| ||  |||||| ||||||||||||||||| ||||||||    
T  43971284 gtttagtatggaaatgagaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatca 43971368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 43972095 - 43972047
Alignment:
Q  308 atgggaaagtaaatattagccattagataaagtagagaacataatttta 356  Q
    |||||||||| ||| ||| |||||||||||| ||||||||||| |||||    
T  43972095 atgggaaagttaattttaaccattagataaaatagagaacatactttta 43972047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 19848850 - 19848919
Alignment:
Q  110 tgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||||||||||| ||||||||| | || ||||||||||||||||| ||||||||||| ||||||    
T  19848850 tgggtaaacggaggtatatttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatcc 19848919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 21171495 - 21171571
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||| | || |||||| |||| ||||||||||||||| | ||||||    
T  21171495 gaccacttgggtaaacggaggtatacttaggggaccaaattgagacaatttaaagttaggggaccaaattgaaatcc 21171571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 18801313 - 18801248
Alignment:
Q  112 ggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||| |||||||| ||||||||| | || ||||||||||||||||||||||||||||| ||||    
T  18801313 ggtaaacagaggtatatttatgggaccaaattgagacactttatagttaggggaccaaaatgaaat 18801248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 34557463 - 34557387
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaagg-accaaagcatgtattaagccaaaaa 219  Q
    ||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||||||    
T  34557463 gagacactttatagttaggggaccaaaataaaatccgaaaataagttaaggaaccaaagcatgtattaagccaaaaa 34557387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 46757461 - 46757514
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||    
T  46757461 ccatgagaaagtaaatattgaccattagataaagtagagaacataattttatca 46757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 17288242 - 17288298
Alignment:
Q  116 aacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    |||||||| | ||||||||||| | || |||||||||||||||||||||||||||||    
T  17288242 aacggaggaagacttatgggaccaaattgagacactttatagttaggggaccaaaat 17288298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 1903937 - 1903870
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| |||| |||||||||||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  1903937 gaccagttggataaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaa 1903870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 33459562 - 33459621
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||||| | ||||||||||| | || |||||||||||||||||| ||||||||||    
T  33459562 gtaaacggaggaagacttatgggaccaaattgagacactttatagttagaggaccaaaat 33459621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 38779041 - 38778963
Alignment:
Q  146 gacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaagg-accaaagcatgtattaagccaaaaataat 223  Q
    ||||||||||||||||||||||||||| |||| |         |||||| |||||||||||||||||||||||||||||    
T  38779041 gacactttatagttaggggaccaaaatgaaattcaaaaatatgttaagggaccaaagcatgtattaagccaaaaataat 38778963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 45721785 - 45721844
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||||| | |||||||| || | || |||||||||||||||||||||||||||||    
T  45721785 gtaaacggaggaaaacttatggaaccaaattgagacactttatagttaggggaccaaaat 45721844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 32548721 - 32548643
Alignment:
Q  269 ggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaac 347  Q
    |||| |||||||||||| ||| || | |||||||   |||||||||||| ||| ||||||||||||| |||||||||||    
T  32548721 ggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaac 32548643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 41516364 - 41516422
Alignment:
Q  114 taaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    |||||||| | ||||||||||||| | ||  ||||||||||||||||||||||||||||    
T  41516364 taaacggaagaatacttatgggaccaaattaagacactttatagttaggggaccaaaat 41516422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 41616690 - 41616618
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcca 215  Q
    ||||||||||||||||||||||||||||| ||||||         |||| |||||||||||||||||||||||    
T  41616690 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcca 41616618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 1904029 - 1904105
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||| ||| ||||| ||||| | || |||||| |||| ||||||| ||||||| | ||||||    
T  1904029 gaccacttgggtaaacggaagtaaacttaggggaccaaattgagacagtttaaagttaggagaccaaattgaaatcc 1904105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 36673886 - 36673957
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    |||||| |||||||||||||||||||||||||||||         |||| ||||||||||||||||||||||    
T  36673886 gagacattttatagttaggggaccaaaataaaatccgaaaataagttaagggaccaaagcatgtattaagcc 36673957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 12732246 - 12732337
Alignment:
Q  268 tggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    ||||| ||||||| |||| ||||| |||  |||||   |||||||||||||||||||  ||||||||| | ||| |||||||| ||||||||    
T  12732246 tggtggggtttagcatgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatca 12732337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 21171402 - 21171335
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| |||| ||||| |||||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  21171402 gaccagttggataaactgaggtatacttaggggaccaaattgagacaatttaaagttaggggaccaaa 21171335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 43704715 - 43704597
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| |||| |         |||| |||||||||    
T  43704715 gaccacttaggtaaacggaggtaaaattatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaattcaaaaataagttaagggaccaaag 43704616  T
Q  202 catgtattaagccaaaaat 220  Q
    |||||||||||||| ||||    
T  43704615 catgtattaagccataaat 43704597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 6772864 - 6772938
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | || |||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  6772864 gaccacttaggtaaacggaggtaaagttgtgggaccaaattgagacagtttaaagttaagggaccaaaatgaaat 6772938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 8439901 - 8439975
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  8439901 gaccacttaggtaaacggaggtaaagttatgggactaaattgagacggtttaaagttaagggaccaaaatgaaat 8439975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 25153756 - 25153698
Alignment:
Q  112 ggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    |||||||||| | | | ||||||||| | || |||||||||||||||||||||||||||    
T  25153756 ggtaaacggaagaagatttatgggaccaaattgagacactttatagttaggggaccaaa 25153698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 29754695 - 29754769
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | |||||| || | || |||||| |||| ||||| ||||||||||| ||||    
T  29754695 gaccacttaggtaaacggaggtaaaattatggaaccaaattgagacagtttaaagttaagggaccaaaatgaaat 29754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 33229514 - 33229440
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| |||| |||||||||||    
T  33229514 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggatcaaaataaaat 33229440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 35087971 - 35088045
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | || |||||||| || |||||| |||| |||||   ||||||||||||||    
T  35087971 gaccacttaggtaaacggaggtaaagttttgggacaaaattgagacagtttaaagttaaaagaccaaaataaaat 35088045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Complemental strand, 36672884 - 36672854
Alignment:
Q  149 actttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||||||||||||||||||||||||    
T  36672884 actttatagttaggggaccaaaataaaatcc 36672854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 37373668 - 37373742
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  37373668 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacgatttaaagttaagggaccaaaatgaaat 37373742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 41126305 - 41126271
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatc 178  Q
    ||||||||||||||||||||||||||||| |||||    
T  41126305 gagacactttatagttaggggaccaaaatgaaatc 41126271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 47809595 - 47809669
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| ||||||||||||||   ||||||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  47809595 gaccacttaggtaaacggaggtaacgttatgggaccaaattgagacagtttaaagttaagggaccaaaatgaaat 47809669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 132018 - 132075
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||||| | ||||||||||| | ||||| |||||| ||||||| |||||||||    
T  132018 gtaaacggaggaagacttatgggaccaaatcgacacacttaatagttaagggaccaaa 132075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 18670419 - 18670460
Alignment:
Q  9 agatacaggtggttcactgttatatacagtggacctacaatc 50  Q
    |||||||||||||||||||||||| || |||||||| |||||    
T  18670419 agatacaggtggttcactgttatacacggtggacctgcaatc 18670460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 19279647 - 19279688
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  19279647 ttatgggaccaaattgagacactttatagttaggggaccaaa 19279688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 35087943 - 35087874
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| |||||||||||    
T  35087943 gaccacttaggtaaacggaggtaaaattatgggaccaaattgagacggtttaaagttaagggaccaaaat 35087874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 28648397 - 28648321
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||| |||||| |||||||||||||| ||| | ||  ||||| |||| |||||||||| |||| | ||||||    
T  28648397 gaccacttgagtaaacagaggtatacttatgagaccaaattaagacagtttaaagttaggggatcaaattgaaatcc 28648321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 38406084 - 38406056
Alignment:
Q  144 gagacactttatagttaggggaccaaaat 172  Q
    |||||||||||||||||||||||||||||    
T  38406084 gagacactttatagttaggggaccaaaat 38406056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 19050856 - 19050780
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||| | || |||||| |||| ||||||||||||||| | ||||||    
T  19050856 gaccacttgggtaaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaattgaaatcc 19050780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 8706049 - 8706125
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||| ||||||||| ||||| | || |||||| |||| ||||||| ||||||| ||||||||    
T  8706049 gaccacttgggtaaacggaagtatacttaggggaccacattgagacagtttaaagttaggagaccaaattaaaatcc 8706125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 15154076 - 15154143
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||||||||||||||||||||||| | ||| | || |||||| |||| |||||||||||||||    
T  15154076 gaccacttgggtaaacggaggtatacttaggcgaccaaattgagacagtttaaagttaggggaccaaa 15154143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 4554657 - 4554747
Alignment:
Q  269 ggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||| |||||||||||| |||||||||||||||    ||||| |||||  ||| ||  |||||||||||||||||||||||| ||||||||    
T  4554657 ggtggggtttagtatgggaaaggaaaattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatca 4554747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 641889 - 641956
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    |||||||| ||||||| |||||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  641889 gaccacttcggtaaacagaggtatacttaggggaccaaattgagacagtttaaagttaggggaccaaa 641956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 15509261 - 15509226
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  15509261 gagacactttatagttaggggaccaaaataaaatcc 15509226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 38394715 - 38394786
Alignment:
Q  106 cacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||||||||||||||||||||| |  || | || |||||| |||| ||||||||||||||| ||||||    
T  38394715 cacttgggtaaacggaggtatacttaggaaactaaattgagacagtttaaagttaggggaccaaattaaaat 38394786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 32521752 - 32521718
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatc 178  Q
    |||||||||||||||||||||||||||||||||||    
T  32521752 gagacactttatagttaggggaccaaaataaaatc 32521718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 37371192 - 37371266
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||||||||| ||||||||||| ||||    
T  37371192 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttatagttaagggaccaaaatgaaat 37371266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4568024 - 4568095
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  4568024 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcc 4568095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 18693779 - 18693731
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||| |||| |||||| |||||||||| ||||||||||||||||    
T  18693779 ttatgggaccagattgagacattttatagttaagggaccaaaataaaat 18693731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 224609 - 224668
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    |||| |||||| | ||||||| ||| | || |||||||||||||||||||||||||||||    
T  224609 gtaatcggaggaagacttatgagaccaaattgagacactttatagttaggggaccaaaat 224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 22650678 - 22650713
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  22650678 gagacactttatagttaggggaccaaaatgaaatcc 22650713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 26711568 - 26711659
Alignment:
Q  269 ggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattag-ccattagataaagtagagaacataattttatca 359  Q
    |||| |||||||||||| |||||||| |||||||    ||| ||||||||||| |||| ||| ||||| || ||||||||| ||||||||||    
T  26711568 ggtggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttagaccactagatcaattagagaacacaattttatca 26711659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 26981305 - 26981396
Alignment:
Q  269 ggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattag-ccattagataaagtagagaacataattttatca 359  Q
    |||| |||||||||||| |||||||| |||||||    ||| ||||||||||| |||| ||| ||||| || ||||||||| ||||||||||    
T  26981305 ggtggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttagaccactagatcaattagagaacacaattttatca 26981396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 1982819 - 1982745
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||| | | ||||||||| | || |||| | |||| ||||| ||||||||||||||||    
T  1982819 gaccacttaggtaaacggaggcaaaattatgggaccaaattgagatagtttaaagttaagggaccaaaataaaat 1982745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 5820692 - 5820766
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| ||||| ||||| ||||    
T  5820692 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacagtttaaagttaagggactaaaatgaaat 5820766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 6914821 - 6914895
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  6914821 gaccacttaggtaaacggaggtaaaattatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 6914895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 32780091 - 32780165
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  32780091 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 32780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 37371164 - 37371090
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||| ||| | ||||||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  37371164 gaccacttaggtaaacggatgtaaagttatgggaccaaattgagacaatttaaagttaagggaccaaaatgaaat 37371090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 223323 - 223266
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||||| | ||||||||||| | ||  | ||||||||||||||||||||||||    
T  223323 gtaaacggaggaagacttatgggaccaaattaatacactttatagttaggggaccaaa 223266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 12936135 - 12936180
Alignment:
Q  127 acttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    |||||| |||| | || |||||||||||||||||||||||||||||    
T  12936135 acttattggaccaaattgagacactttatagttaggggaccaaaat 12936180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 12950293 - 12950338
Alignment:
Q  127 acttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    |||||| |||| | || |||||||||||||||||||||||||||||    
T  12950293 acttattggaccaaattgagacactttatagttaggggaccaaaat 12950338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 20988756 - 20988723
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  20988756 gagacactttatagttaggggaccaaaatgaaat 20988723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 7345425 - 7345473
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||| | || |||||||||||||||||| |||||||||| ||||    
T  7345425 ttatgggaccaaattgagacactttatagttagaggaccaaaatgaaat 7345473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 21387718 - 21387670
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||| | || |||||| |||||||||||||||||||||| ||||    
T  21387718 ttatgggaccaaattgagacattttatagttaggggaccaaaatgaaat 21387670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 48253030 - 48252967
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||||| | ||||||||||| | || |||||||||||||||||||||||||||||||||    
T  48253030 gtaaacggaggaagacttatgggaccaaattgagacactttatagttaggggaccaaaataaaa 48252967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 26798924 - 26798988
Alignment:
Q  112 ggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    |||||||||||| | | ||||||||| | || |||||| ||||||||||||||||||||||||||    
T  26798924 ggtaaacggaggaagaattatgggaccaaattgagacattttatagttaggggaccaaaataaaa 26798988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 53049087 - 53049122
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  53049087 gagacactttatagttaggggaccaaaataaaatcc 53049122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 48035374 - 48035451
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagccaaaaat 220  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||| ||||    
T  48035374 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagccataaat 48035451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 32974273 - 32974345
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcca 215  Q
    ||||||||||||||||||||||||||||| ||||||         |||| |||||||||||||||||||||||    
T  32974273 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcca 32974345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 48034075 - 48034007
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaaggaccaaagcatgtattaag 212  Q
    |||||||||||||||||| |||||||||||||||||         |||||||||||| |||||||||||    
T  48034075 gagacactttatagttagaggaccaaaataaaatccgaaaataagttaaggaccaaaacatgtattaag 48034007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 2224979 - 2224903
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||| |||||||||| |||||||||||| ||||| | || ||||||  ||| ||||| ||||||||| ||||||||    
T  2224979 gaccagttgggtaaacagaggtatacttaggggaccaaattgagacagattaaagttaagggaccaaattaaaatcc 2224903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 32973205 - 32973134
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  32973205 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcc 32973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 39288489 - 39288560
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaag-gaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         ||||| |||||||||||||||||||||    
T  39288489 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagtgaccaaagcatgtattaagcc 39288560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 52292660 - 52292589
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  52292660 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcc 52292589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 53047963 - 53047892
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  53047963 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcc 53047892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 53342782 - 53342711
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaagg-accaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||||| ||||||||||||||||||||    
T  53342782 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaaggaaccaaagcatgtattaagcc 53342711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 5417098 - 5417133
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5417098 gagacactttatagttaggggaccaaaatgaaatcc 5417133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 8372651 - 8372694
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||| | || |||||||||||||||||||||||||||||    
T  8372651 ttatgggaccaaattgagacactttatagttaggggaccaaaat 8372694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 10987688 - 10987731
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||| | || |||||||||||||||||||||||||||||    
T  10987688 ttatgggaccaaattgagacactttatagttaggggaccaaaat 10987731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 11219496 - 11219461
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11219496 gagacactttatagttaggggaccaaaatgaaatcc 11219461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 40502265 - 40502300
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    |||| |||||||||||||||||||||||||||||||    
T  40502265 gagatactttatagttaggggaccaaaataaaatcc 40502300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 47766970 - 47767028
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||||| | ||||||||||| | || ||||||||||||||||| |||||||||||    
T  47766970 gtaaacggaggaagacttatgggaccaaattgagacactttatagtta-gggaccaaaat 47767028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 51214175 - 51214289
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    |||||||| ||||| |||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||| |||| |         |||| |||||||||    
T  51214175 gaccacttaggtaagcggaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaatgaaattcaaaaataagttaagggaccaaag 51214274  T
Q  202 catgtattaagccaa 216  Q
    |||||||||||||||    
T  51214275 catgtattaagccaa 51214289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 52293573 - 52293608
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  52293573 gagacactttatagttaggggaccaaaatgaaatcc 52293608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 52705358 - 52705393
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  52705358 gagacactttatagttaggggaccaaaatgaaatcc 52705393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 12105466 - 12105392
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | |||| |||| | || ||||| ||||| ||||| ||||||||||| ||||    
T  12105466 gaccacttaggtaaacggaggtaaagttattggaccaaattgagacgctttaaagttaagggaccaaaatgaaat 12105392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 30431482 - 30431408
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| | ||| ||||||||||| ||||    
T  30431482 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacagtttaaaattaagggaccaaaatgaaat 30431408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 30431507 - 30431581
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  30431507 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 30431581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 39190774 - 39190808
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatc 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  39190774 gagacactttataattaggggaccaaaataaaatc 39190808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 54109631 - 54109705
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||| ||| | || |||||| |||| ||||| ||||||||||| ||||    
T  54109631 gaccacttaggtaaacggaggtaaagttatgagaccaaattgagacaatttaaagttaagggaccaaaatgaaat 54109705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 54654001 - 54654051
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||| | || ||||||||||||||||| ||||||||||| ||||||    
T  54654001 ttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatcc 54654051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 1301098 - 1301065
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||| ||||||||||||||||    
T  1301098 gagacactttatagttatgggaccaaaataaaat 1301065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 11220708 - 11220741
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  11220708 gagacactttatagttaggggaccaaaatgaaat 11220741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 15450262 - 15450315
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||| ||| ||  ||||||||| |||||||||||||| ||||||||    
T  15450262 ccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatca 15450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 51401386 - 51401427
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  51401386 ttatgggaccaaattgagacactttatagttaggggaccaaa 51401427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 53808399 - 53808358
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| |||| ||||||||||||||||||| |||||||    
T  53808399 ttatgggaccagattgagacactttatagttaggagaccaaa 53808358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 55442660 - 55442627
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  55442660 gagacactttatagttaggggaccaaaatgaaat 55442627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 55443600 - 55443633
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  55443600 gagacactttatagttaggggaccaaaatgaaat 55443633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 46987461 - 46987533
Alignment:
Q  105 ccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||| ||||||| |||||| | ||||||||| | || |||||  |||| ||||| ||||||||||||||||    
T  46987461 ccacttaggtaaacagaggtaaaattatgggaccaaattgagacggtttaaagttaagggaccaaaataaaat 46987533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 48826833 - 48826865
Alignment:
Q  147 acactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||| |||||||||||||||||||||    
T  48826833 acactttatagctaggggaccaaaataaaatcc 48826865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 39135519 - 39135635
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    ||||||||||||||||||||||||||||| ||||| | || |||||| |||| ||||||||||| ||| | ||||||         |||| |||||||||    
T  39135519 gaccacttgggtaaacggaggtatacttaggggaccaaattgagacagtttaaagttaggggactaaattgaaatccaaaaataaattaagggaccaaag 39135618  T
Q  202 catgtattaagccaaaa 218  Q
    |||||||||| ||||||    
T  39135619 catgtattaaaccaaaa 39135635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 46796045 - 46796104
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||||| | ||||||||||| | || |||||||||||||||||||||||||||||    
T  46796045 gtaaacggaggaagacttatgggaccaaattgagacactttatagttaggggaccaaaat 46796104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 50710428 - 50710375
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  50710428 ccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatca 50710375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 23752123 - 23752056
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||||||||||| | ||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  23752123 gaccacttgggtaaacgaaagtatacttaggggaccaaattgagacaatttaaagttaggggaccaaa 23752056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 33370929 - 33370846
Alignment:
Q  263 tttgatggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaa 346  Q
    ||||| |||| ||||||| |||| |||||| | |||||||   |||||||||||| ||| ||||||||||||| ||||||||||    
T  33370929 tttgaaggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaa 33370846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 232098 - 232028
Alignment:
Q  268 tggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaa 338  Q
    ||||| |||||||||||| ||||| || |||||||   |||||||||||||||| ||| ||||||||||||    
T  232098 tggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataaa 232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 26202395 - 26202469
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||| ||||    
T  26202395 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaatgaaat 26202469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 1273466 - 1273515
Alignment:
Q  127 acttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||||| | || ||||||||||||||||||||||||||| |||||    
T  1273466 acttatgggaccaaattgagacactttatagttaggggaccaaattaaaa 1273515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 6680353 - 6680300
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||  ||||||||| ||||| |||||||| ||||||||    
T  6680353 ccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatca 6680300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 53664249 - 53664302
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||  |||||||||||| ||||||||||  ||||||||    
T  53664249 ccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatca 53664302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 937148 - 937219
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  937148 gagacactttatagttaggggaccaaaatgaaatccgaaaataaattaagggaccaaagcatgtattaagcc 937219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 6246802 - 6246874
Alignment:
Q  287 aaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    ||||| ||||||||||   |||||||||||| ||| ||  ||||||||||| |||||||||||| ||||||||    
T  6246802 aaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatca 6246874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 52880880 - 52880848
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaa 176  Q
    |||||||||||||||||||||||||||||||||    
T  52880880 gagacactttatagttaggggaccaaaataaaa 52880848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 526769 - 526804
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  526769 gagacactttatagttaggggaccaaaatgaaatcc 526804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 3528287 - 3528224
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    |||||| |||| | ||||||||||| | || ||||||||||||||||| || ||||||||||||    
T  3528287 gtaaacagaggaaaacttatgggaccaaattgagacactttatagttaaggaaccaaaataaaa 3528224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 12396924 - 12396959
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12396924 gagacactttatagttaggggaccaaaatgaaatcc 12396959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 15787537 - 15787580
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaat 172  Q
    ||||||||| | || |||||||||||||||||||||||||||||    
T  15787537 ttatgggaccaaattgagacactttatagttaggggaccaaaat 15787580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 26428854 - 26428921
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    |||||||||||||||| || ||||||||| ||||| | || |||||| |||| |||||| ||||||||    
T  26428854 gaccacttgggtaaacagaagtatacttaggggaccaaattgagacaatttaaagttagaggaccaaa 26428921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 28103520 - 28103571
Alignment:
Q  128 cttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||| | || ||||||||||||||||| ||||||||||| ||||||    
T  28103520 cttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatcc 28103571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 38554026 - 38553963
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||||| | ||||||| ||| | || ||||||||||||||||||  |||||||||||||    
T  38554026 gtaaacggaggaagacttatgagaccaaattgagacactttatagttagaagaccaaaataaaa 38553963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 52881980 - 52882015
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52881980 gagacactttatagtcaggggaccaaaataaaatcc 52882015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 26202367 - 26202293
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||  | || |||||  |||| ||||| ||||||||||||||||    
T  26202367 gaccacttaggtaaacggaggtaaaattatgggattaaattgagacggtttaaagttaagggaccaaaataaaat 26202293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 34457577 - 34457651
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||| |  ||| ||||| ||||||||||||||||    
T  34457577 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagatagattaaagttaagggaccaaaataaaat 34457651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 33377399 - 33377440
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  33377399 ttatgggaccaaattgagacactttatagttaggggaccaaa 33377440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 37560334 - 37560375
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  37560334 ttatgggaccaaattgagacactttatagttaggggaccaaa 37560375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 40146656 - 40146705
Alignment:
Q  127 acttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||||| | || |||||||||||||||||  ||||||||||||||    
T  40146656 acttatgggaccaaattgagacactttatagttaaaggaccaaaataaaa 40146705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 44664242 - 44664283
Alignment:
Q  9 agatacaggtggttcactgttatatacagtggacctacaatc 50  Q
    |||||||||||||||||||||||| || |||||||| |||||    
T  44664242 agatacaggtggttcactgttatacacggtggacctgcaatc 44664283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 21104360 - 21104388
Alignment:
Q  144 gagacactttatagttaggggaccaaaat 172  Q
    |||||||||||||||||||||||||||||    
T  21104360 gagacactttatagttaggggaccaaaat 21104388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 32508532 - 32508460
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaa 175  Q
    |||||||  |||||||||||||| | ||||||||  | || |||||| |||| ||||| ||||||||||||||    
T  32508532 gaccactaaggtaaacggaggtaaagttatgggatcaaattgagacagtttaaagttaagggaccaaaataaa 32508460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 40135346 - 40135421
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatc 178  Q
    ||||||||||||||||  ||||||||||||| ||||| || |||||| |||| |||||| |||||||||| |||||    
T  40135346 gaccacttgggtaaacaaaggtatacttatgtgacaaaattgagacattttaaagttagaggaccaaaatgaaatc 40135421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 50679840 - 50679903
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||||| | ||||||||||| | || ||||||||||||||||| |||||||||||||||    
T  50679840 gtaaacggaggaagacttatgggaccaaattgagacactttatagttaagggaccaaaataaaa 50679903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 20171171 - 20171245
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||||||||    
T  20171171 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaataaaat 20171245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 25866653 - 25866579
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| ||||| ||||||||||||||||    
T  25866653 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaataaaat 25866579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 38458193 - 38458117
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||| ||||||||| ||||  | || |||||| |||| ||||||||||||||| | ||||||    
T  38458193 gaccacttgggtaaacggaagtatacttaggggatcaaattgagacaatttaaagttaggggaccaaattgaaatcc 38458117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 25035465 - 25035398
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| ||||||||||||| ||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  25035465 gaccatttgggtaaacggaagtatacttaggggaccaaattgagacaatttaaagttaggggaccaaa 25035398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 25040678 - 25040611
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| ||||||||||||| ||||||||| ||||| | || |||||| |||| |||||||||||||||    
T  25040678 gaccatttgggtaaacggaagtatacttaggggaccaaattgagacaatttaaagttaggggaccaaa 25040611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 26054960 - 26054887
Alignment:
Q  147 acactttatagttaggggaccaaaataaaatccnnnnnnnnnttaaggaccaaagcatgtattaagccaaaaat 220  Q
    |||||||||||||||||||||||||| ||||||         ||| |||||||||||||||||||||| |||||    
T  26054960 acactttatagttaggggaccaaaatgaaatccaaaaataagttagggaccaaagcatgtattaagcctaaaat 26054887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 26056182 - 26056232
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||| | || ||||||||||||||||||||||||||||| ||||||    
T  26056182 ttatgggaccaaattgagacactttatagttaggggaccaaaatgaaatcc 26056232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 1873904 - 1873937
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||||||||    
T  1873904 gagacactttatagttaggggaccaaaataaaat 1873937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 34532752 - 34532785
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||||||||    
T  34532752 gagacactttatagttaggggaccaaaataaaat 34532785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 2236879 - 2236808
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  2236879 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcc 2236808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 35683121 - 35683050
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||||||||    
T  35683121 gagacactttatagttaggggaccaaaatgaaatccgaaaataagttaagggaccaaagcatgtattaagcc 35683050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 31788324 - 31788237
Alignment:
Q  269 ggtgtggtttagtatggaaaaggaaaattgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataatttta 356  Q
    |||| |||||||||||| || |  || |||||||   |||||||||||| ||| ||| |||||||||||| ||||||||||| |||||    
T  31788324 ggtgaggtttagtatgggaatgagaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatactttta 31788237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 48934307 - 48934272
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48934307 gagacactttatagttaggggaccaaaatgaaatcc 48934272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 48935160 - 48935195
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48935160 gagacactttatagttaggggaccaaaatgaaatcc 48935195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 1061394 - 1061360
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatc 178  Q
    |||||||||||||||| ||||||||||||||||||    
T  1061394 gagacactttatagtttggggaccaaaataaaatc 1061360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 3979348 - 3979398
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||| | || ||||||||||||||||| ||||||||||| ||||||    
T  3979348 ttatgggaccaaattgagacactttatagttaagggaccaaaatgaaatcc 3979398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 27114790 - 27114716
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| | ||| ||||||||||||||||    
T  27114790 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacgatttaaaattaagggaccaaaataaaat 27114716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 33941424 - 33941350
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||| ||||||||||| | |||||||||| |||| | || |||||| |||||| |||  |||||||||||||||    
T  33941424 gaccatttgggtaaacgaatgtatacttataggaccaaattgagacattttataattaaaggaccaaaataaaat 33941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 52371840 - 52371766
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  52371840 gaccacttaggtaaacggaggtaaagttatgggactaaattgagacggtttaaagttaagggaccaaaatgaaat 52371766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 13641338 - 13641297
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  13641338 ttatgggaccaaattgagacactttatagttaggggaccaaa 13641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 25786049 - 25786008
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  25786049 ttatgggaccaaattgagacactttatagttaggggaccaaa 25786008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 32823556 - 32823491
Alignment:
Q  112 ggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||| |||||| | ||||||||| | || |||||| |||| ||||| ||||||||||||||||    
T  32823556 ggtaaacagaggtaaagttatgggaccaaattgagacagtttaaagttaagggaccaaaataaaat 32823491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 35684259 - 35684323
Alignment:
Q  151 tttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    |||||||||||||||||||||||||||||         |||| ||||||||||||||||||||||    
T  35684259 tttatagttaggggaccaaaataaaatccgaaaataagttaatggaccaaagcatgtattaagcc 35684323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 9123452 - 9123484
Alignment:
Q  147 acactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||||||| ||||||||||||||||||    
T  9123452 acactttatagttaagggaccaaaataaaatcc 9123484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 9575251 - 9575307
Alignment:
Q  114 taaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    |||||||||||||||||| ||||| | || |||||| |||| |||||| ||||||||    
T  9575251 taaacggaggtatacttaggggaccaaattgagacaatttaaagttagaggaccaaa 9575307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 11469755 - 11469723
Alignment:
Q  327 ccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||||||| ||||||||    
T  11469755 ccattagataaagtagagaacatacttttatca 11469723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 31787536 - 31787568
Alignment:
Q  327 ccattagataaagtagagaacataattttatca 359  Q
    |||||||||||||||||||||||| ||||||||    
T  31787536 ccattagataaagtagagaacatacttttatca 31787568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 32823576 - 32823624
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||| | || |||||| |||| ||||||||||||||||||||||    
T  32823576 ttatgggaccaaattgagacagtttaaagttaggggaccaaaataaaat 32823624  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 39193678 - 39193614
Alignment:
Q  113 gtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||| | ||||||||  | || |||||| |||| ||||| ||||||||||||||||    
T  39193678 gtaaacggaggtaaagttatgggatcaaattgagacagtttaaagttaagggaccaaaataaaat 39193614  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 52741554 - 52741522
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaa 176  Q
    |||||||||||||||||| ||||||||||||||    
T  52741554 gagacactttatagttagaggaccaaaataaaa 52741522  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 13173103 - 13173030
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagccaa 216  Q
    ||||||||||||||||||||||||||||||||||||         |||| ||||||||||||||||||||||||    
T  13173103 gagacactttatagttaggggaccaaaataaaatccgaaaataagttaagggaccaaagcatgtattaagccaa 13173030  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 2138687 - 2138722
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  2138687 gagacactttatagttaggggaccaaaataaaatcc 2138722  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 26584087 - 26584122
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  26584087 gagacactttatagttaggggaccaaaataaaatcc 26584122  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 8447287 - 8447252
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8447287 gagacactttatagttaggggaccaaaatgaaatcc 8447252  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 8456091 - 8456056
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8456091 gagacactttatagttaggggaccaaaatgaaatcc 8456056  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 9927687 - 9927640
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaaataaaa 176  Q
    ||||||||| | || ||||||||||||||||||||||||||| |||||    
T  9927687 ttatgggaccaaattgagacactttatagttaggggaccaaactaaaa 9927640  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 12203280 - 12203398
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaag 201  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||| |||| |||||  |||||||||| |||| |         |||| |||| ||||    
T  12203280 gaccacttaggtaaacggaggtaaaattatgggaccaaattgagacagtttaaagttaaaggaccaaaatgaaattcaaaaataagttaagggactaaag 12203379  T
Q  202 catgtattaagccaaaaat 220  Q
    |||||||||||||||||||    
T  12203380 catgtattaagccaaaaat 12203398  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 28226468 - 28226503
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  28226468 gagacactttatagttaggggaccaaaatgaaatcc 28226503  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 17916478 - 17916552
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||| ||| | || |||||| |||| ||||| ||||||||||| ||||    
T  17916478 gaccacttaggtaaacggaggtaaagttatgtgaccaaattgagacagtttaaagttaagggaccaaaatgaaat 17916552  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 21749811 - 21749885
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  21749811 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacggtttaaagttaagggaccaaaatgaaat 21749885  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 19367783 - 19367750
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  19367783 gagacactttatagttaggggaccaaaatgaaat 19367750  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 22299938 - 22299979
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  22299938 ttatgggaccaaattgagacactttatagttaggggaccaaa 22299979  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 28225490 - 28225457
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  28225490 gagacactttatagttaggggaccaaaatgaaat 28225457  T

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Target: scaffold0155 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 5235 - 5164
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatccnnnnnnnnnttaa-ggaccaaagcatgtattaagcc 214  Q
    |||||||||||||||||||||||||||| |||||||         |||| ||||||||||||||||||||||    
T  5235 gagacactttatagttaggggaccaaaagaaaatccaaaaataagttaagggaccaaagcatgtattaagcc 5164  T

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Target: scaffold0064 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 20498 - 20431
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||| ||||||||||||| ||||||||| ||||| | || |||||| |||| |||||| ||||||||    
T  20498 gaccagttgggtaaacggaagtatacttaggggaccaaattgagacagtttaaagttagaggaccaaa 20431  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 26966 - 27001
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaatcc 179  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26966 gagacactttatagttaggggaccaaaatgaaatcc 27001  T

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Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 25988 - 25955
Alignment:
Q  144 gagacactttatagttaggggaccaaaataaaat 177  Q
    ||||||||||||||||||||||||||||| ||||    
T  25988 gagacactttatagttaggggaccaaaatgaaat 25955  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 28239 - 28165
Alignment:
Q  103 gaccacttgggtaaacggaggtatacttatgggacaagatcgagacactttatagttaggggaccaaaataaaat 177  Q
    |||||||| |||||||||||||| | ||||||||| | || |||||  |||| ||||| ||||||||||| ||||    
T  28239 gaccacttaggtaaacggaggtaaagttatgggaccaaattgagacgttttaaagttaagggaccaaaatgaaat 28165  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 458511 - 458545
Alignment:
Q  145 agacactttatagttaggggaccaaaataaaatcc 179  Q
    |||||||||||| ||||||||||||||||||||||    
T  458511 agacactttataattaggggaccaaaataaaatcc 458545  T

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Target: scaffold1974 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 663 - 704
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  663 ttatgggactaaattgagacactttatagttaggggaccaaa 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 611 - 570
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  611 ttatgggactaaattgagacactttatagttaggggaccaaa 570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 9513 - 9554
Alignment:
Q  129 ttatgggacaagatcgagacactttatagttaggggaccaaa 170  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  9513 ttatgggactaaattgagacactttatagttaggggaccaaa 9554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 12870 - 12817
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||| ||| ||  |||||||||||| ||||||||||| ||||||||    
T  12870 ccatgggaaagttaattttgaccattagataaactagagaacatacttttatca 12817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 11929 - 11876
Alignment:
Q  306 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatca 359  Q
    |||||||||||| ||| ||  ||||||||| |||||||||||||| ||||||||    
T  11929 ccatgggaaagttaatcttgaccattagattaagtagagaacatatttttatca 11876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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