View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9513_low_4 (Length: 361)
Name: NF9513_low_4
Description: NF9513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9513_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 42935903 - 42935559
Alignment:
| Q |
1 |
cagtggctggaatttcaatgaagatggattggaacttgtgcctgtattcccaaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaa |
100 |
Q |
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| T |
42935903 |
cagtggctggaatttcaatgaagatggattggaacttgtgcctgtattcccaaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaa |
42935804 |
T |
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| Q |
101 |
gaagaaaaagtgatccaagaggatgatgttgttacagcatcaggaactgtgatggagccaaagaccaatactactgat---gttgatcatgaaaatgttg |
197 |
Q |
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| T |
42935803 |
gaagaaaaagtgatccaagaggatgctgttgttacagcatcaggaactgtgatggagccaaagaccaatacttctgatgtggttgatcatgaaaatgtcg |
42935704 |
T |
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| Q |
198 |
gtggtgttgttaagaaccgcgaagctacgttggcaacgttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatct |
297 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935703 |
gtggtgttgttaagaaccgtgaagctacgttggcaacgttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatct |
42935604 |
T |
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| Q |
298 |
aattggtggagaggagattcatgtggctgaaagtgatgagaaaat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935603 |
aattggtggagaggagattcatgtggctgaaagtgatgagaaaat |
42935559 |
T |
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