View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9513_low_5 (Length: 336)
Name: NF9513_low_5
Description: NF9513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9513_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 48277141 - 48277475
Alignment:
| Q |
1 |
ggaccagaatggagttagtcaagttgtgcttcggaccccacaaggcgcttcggcaagggtgaggaaagcttgtcgattgatgtgttcgcatcagttttaa |
100 |
Q |
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| T |
48277141 |
ggaccagaatggagttagtcaagttgtgcttcggaccccacaaggcgcttcggcaagggtgaggaaagcttgtcgattgatgtgttcgcatcagttttaa |
48277240 |
T |
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| Q |
101 |
c----------------tttaaatatcaatacatgagaaggaaatcttggttcataatgatatttttagtttgaacatgtaatcaaaagtagcattagga |
184 |
Q |
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| T |
48277241 |
cttttaacatttataactttaaatatcaatacatgagaaggaaatcttggttcataatgatatttttagtttgaacatgtaatcaaaaatagcattagga |
48277340 |
T |
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| Q |
185 |
attaggattaactgtctttttcttgaaattaggtgagcttgaatggagcacaggtcacgtcatggcgtaatgagcagggggaagaacttctattcacaag |
284 |
Q |
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| T |
48277341 |
attaggattaactgtctttttcttgaaattaggtgagcttgaatggagcacaggtcacgtcatggcgtaatgagcagggggaagaacttctattcacaag |
48277440 |
T |
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| Q |
285 |
tagcaaggtatgtcttttagttttcattacaaagt |
319 |
Q |
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| T |
48277441 |
tagcaaggtatgtcttttagttttcattacaaagt |
48277475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 36807168 - 36807285
Alignment:
| Q |
202 |
ttttcttgaaattaggtgagcttgaatggagcacaggtcacgtcatggcgtaatgagcagggggaagaacttctattcacaagtagcaaggtatgtcttt |
301 |
Q |
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| T |
36807168 |
ttttcttgcaattaggtaagcttacatggagcgcaggtcacttcatggcgtaatgagcagggggaagaactgctattcacaagctgcaaggtgtgtcttt |
36807267 |
T |
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| Q |
302 |
tagttttcattacaaagt |
319 |
Q |
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| T |
36807268 |
gaattttgattaaaaagt |
36807285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36806970 - 36807011
Alignment:
| Q |
19 |
tcaagttgtgcttcggaccccacaaggcgcttcggcaagggt |
60 |
Q |
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| T |
36806970 |
tcaagttgtacttcggaccccacaaggcgcttcggcacgggt |
36807011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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