View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9513_low_6 (Length: 334)
Name: NF9513_low_6
Description: NF9513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9513_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 52878105 - 52878409
Alignment:
| Q |
19 |
atgggagggtggttcacagaacatatcaataccnnnnnnnnn--ccttttgaagtcatgttaatcgtatgttggatgtgaacaatcatattcgtttgttg |
116 |
Q |
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| T |
52878105 |
atgggagggtggttcacagaacatatcaatacctttttttttttccttttgaaatcatgttaatcgtatgttggatgtgaacaatcatattcgtttgttg |
52878204 |
T |
|
| Q |
117 |
tcaagcaaacttaacctcaaagttaaaatgcaacaataaaatactcttaatattaaagatcaagacactaaattttaagacacaaacatgtcttagagag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52878205 |
tcaagcaaacttaacctcaaagttaaaatgcaacaataaaatactcttaatattagagatcaagacactaaattttaagacacaaacatgtcttagagag |
52878304 |
T |
|
| Q |
217 |
aatagtctcgatcataactttagagtcgctttcaaagataatatgatcaacacctctgttacacaccacttgaattgcctcaaaactcaagtaacgtcgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52878305 |
aatagtctcgatcataactttagagtcgctttcaaagataacatgatcaacacctctgttacacaccacttgaattgcctcaaaactcaagtaacgtcgc |
52878404 |
T |
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| Q |
317 |
aacct |
321 |
Q |
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||||| |
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| T |
52878405 |
aacct |
52878409 |
T |
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