View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9514_11 (Length: 312)

Name: NF9514_11
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9514_11
NF9514_11
[»] chr1 (15 HSPs)
chr1 (37-307)||(26906112-26906378)
chr1 (37-301)||(5378296-5378557)
chr1 (37-307)||(21633635-21633901)
chr1 (37-307)||(15809846-15810117)
chr1 (37-171)||(40999034-40999168)
chr1 (86-172)||(14272016-14272101)
chr1 (86-166)||(14281888-14281967)
chr1 (257-307)||(14271885-14271935)
chr1 (257-307)||(14281752-14281802)
chr1 (207-307)||(29029843-29029943)
chr1 (88-170)||(21919431-21919512)
chr1 (254-302)||(40998913-40998961)
chr1 (257-299)||(3470798-3470840)
chr1 (86-155)||(3470952-3471020)
chr1 (37-101)||(28310080-28310144)
[»] chr2 (13 HSPs)
chr2 (33-302)||(14273255-14273521)
chr2 (99-294)||(29911278-29911470)
chr2 (1-175)||(31710461-31710634)
chr2 (3-175)||(24022737-24022908)
chr2 (3-174)||(18578707-18578877)
chr2 (86-307)||(35877620-35877852)
chr2 (86-307)||(35885109-35885341)
chr2 (86-307)||(36724822-36725054)
chr2 (1-120)||(1800510-1800629)
chr2 (1-120)||(22632419-22632538)
chr2 (86-168)||(3397027-3397108)
chr2 (257-307)||(3397223-3397273)
chr2 (86-135)||(16446668-16446716)
[»] chr8 (31 HSPs)
chr8 (45-299)||(15834014-15834266)
chr8 (3-168)||(24096077-24096241)
chr8 (37-248)||(7789001-7789211)
chr8 (193-307)||(24095963-24096079)
chr8 (37-302)||(31575272-31575543)
chr8 (86-307)||(20030283-20030505)
chr8 (37-175)||(20714124-20714262)
chr8 (86-307)||(42712033-42712261)
chr8 (37-161)||(24634023-24634146)
chr8 (86-172)||(12915563-12915648)
chr8 (86-172)||(12925458-12925543)
chr8 (86-176)||(20044922-20045011)
chr8 (39-175)||(33601768-33601903)
chr8 (210-307)||(26193875-26193968)
chr8 (39-170)||(33592134-33592264)
chr8 (86-167)||(18883163-18883243)
chr8 (89-172)||(18143427-18143509)
chr8 (86-172)||(4843720-4843805)
chr8 (199-307)||(12767889-12767993)
chr8 (257-307)||(12915727-12915777)
chr8 (86-160)||(18233031-18233104)
chr8 (86-160)||(18242482-18242555)
chr8 (216-307)||(20047430-20047517)
chr8 (104-172)||(20714417-20714484)
chr8 (86-170)||(25037026-25037109)
chr8 (86-170)||(25051063-25051146)
chr8 (254-301)||(18143274-18143321)
chr8 (86-132)||(18251933-18251978)
chr8 (86-176)||(12767735-12767826)
chr8 (254-307)||(18883006-18883059)
chr8 (268-308)||(4843560-4843600)
[»] chr6 (13 HSPs)
chr6 (37-302)||(11421322-11421583)
chr6 (44-302)||(14102369-14102624)
chr6 (1-175)||(23895611-23895784)
chr6 (1-215)||(18420571-18420787)
chr6 (37-191)||(12173476-12173629)
chr6 (3-170)||(10259779-10259945)
chr6 (86-301)||(17512088-17512306)
chr6 (37-132)||(23110257-23110351)
chr6 (86-172)||(22066397-22066482)
chr6 (247-307)||(2850722-2850782)
chr6 (199-307)||(8668629-8668733)
chr6 (86-168)||(23884596-23884677)
chr6 (232-292)||(12173628-12173688)
[»] scaffold0482 (1 HSPs)
scaffold0482 (37-248)||(3588-3798)
[»] chr5 (31 HSPs)
chr5 (37-302)||(42732445-42732709)
chr5 (37-172)||(18569094-18569229)
chr5 (1-175)||(22489205-22489378)
chr5 (37-175)||(24412883-24413021)
chr5 (37-175)||(24422332-24422470)
chr5 (37-175)||(30454196-30454334)
chr5 (37-175)||(30459254-30459392)
chr5 (1-170)||(30444829-30444997)
chr5 (86-307)||(11223479-11223705)
chr5 (33-176)||(26652670-26652812)
chr5 (33-176)||(26924255-26924397)
chr5 (33-171)||(4635996-4636134)
chr5 (57-173)||(37514856-37514971)
chr5 (210-302)||(26652878-26652968)
chr5 (210-302)||(26924463-26924553)
chr5 (37-135)||(22118137-22118235)
chr5 (1-120)||(5600597-5600716)
chr5 (1-120)||(5610243-5610362)
chr5 (208-302)||(22117913-22118005)
chr5 (86-172)||(33955498-33955583)
chr5 (1-120)||(31150684-31150803)
chr5 (86-170)||(22448330-22448413)
chr5 (86-172)||(13815371-13815456)
chr5 (86-172)||(20036103-20036188)
chr5 (86-166)||(20834535-20834614)
chr5 (86-160)||(24244053-24244126)
chr5 (86-160)||(24290677-24290750)
chr5 (254-307)||(33955349-33955402)
chr5 (254-308)||(13815211-13815265)
chr5 (257-307)||(20038485-20038535)
chr5 (257-307)||(20036287-20036337)
[»] chr3 (20 HSPs)
chr3 (37-204)||(24794511-24794679)
chr3 (70-302)||(7783863-7784089)
chr3 (37-175)||(28351715-28351853)
chr3 (37-175)||(28367648-28367786)
chr3 (37-175)||(28375466-28375604)
chr3 (37-175)||(28383288-28383426)
chr3 (86-307)||(13328139-13328361)
chr3 (52-194)||(4951663-4951802)
chr3 (37-147)||(38529200-38529310)
chr3 (37-167)||(5385745-5385874)
chr3 (33-167)||(19388813-19388948)
chr3 (67-195)||(4361491-4361618)
chr3 (1-120)||(17529910-17530029)
chr3 (255-302)||(23487370-23487417)
chr3 (56-120)||(54624727-54624791)
chr3 (37-120)||(32877923-32878006)
chr3 (86-172)||(46305572-46305656)
chr3 (257-307)||(46305313-46305363)
chr3 (86-176)||(23487145-23487236)
chr3 (254-302)||(4951850-4951898)
[»] chr4 (16 HSPs)
chr4 (1-204)||(37059106-37059313)
chr4 (37-175)||(3242282-3242420)
chr4 (37-172)||(54689911-54690046)
chr4 (37-172)||(54699342-54699477)
chr4 (37-175)||(26812563-26812701)
chr4 (37-175)||(26822030-26822168)
chr4 (37-204)||(3918121-3918294)
chr4 (44-171)||(15842897-15843024)
chr4 (86-176)||(50516492-50516581)
chr4 (206-307)||(11482548-11482645)
chr4 (67-195)||(18125387-18125514)
chr4 (86-172)||(20884447-20884532)
chr4 (56-120)||(23622991-23623055)
chr4 (257-307)||(20884321-20884371)
chr4 (86-176)||(11482419-11482508)
chr4 (255-301)||(50516361-50516407)
[»] chr7 (18 HSPs)
chr7 (37-204)||(7593061-7593227)
chr7 (1-175)||(15174560-15174733)
chr7 (46-173)||(48710004-48710131)
chr7 (86-302)||(32818100-32818318)
chr7 (3-170)||(19352589-19352755)
chr7 (210-307)||(48709726-48709821)
chr7 (37-172)||(14634776-14634910)
chr7 (86-172)||(14644476-14644561)
chr7 (86-172)||(33292175-33292260)
chr7 (86-176)||(9737050-9737139)
chr7 (86-172)||(15947371-15947456)
chr7 (232-301)||(48709852-48709919)
chr7 (199-302)||(28344280-28344379)
chr7 (154-302)||(5293070-5293217)
chr7 (86-160)||(11634340-11634413)
chr7 (88-170)||(13874492-13874572)
chr7 (257-307)||(15947218-15947268)
chr7 (257-307)||(9737212-9737262)
[»] scaffold0001 (1 HSPs)
scaffold0001 (37-175)||(408383-408521)
[»] scaffold0028 (2 HSPs)
scaffold0028 (37-172)||(94429-94564)
scaffold0028 (37-172)||(103870-104005)
[»] scaffold0206 (1 HSPs)
scaffold0206 (86-307)||(2213-2435)
[»] scaffold0040 (4 HSPs)
scaffold0040 (53-175)||(30818-30940)
scaffold0040 (37-171)||(10097-10230)
scaffold0040 (190-307)||(26660-26777)
scaffold0040 (232-307)||(23527-23600)
[»] scaffold0021 (2 HSPs)
scaffold0021 (86-307)||(124151-124373)
scaffold0021 (56-120)||(100055-100119)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-120)||(24610-24729)
[»] scaffold0269 (1 HSPs)
scaffold0269 (56-120)||(14863-14927)
[»] scaffold0053 (1 HSPs)
scaffold0053 (86-175)||(2256-2344)
[»] scaffold0010 (2 HSPs)
scaffold0010 (86-167)||(257062-257142)
scaffold0010 (254-307)||(257251-257304)
[»] scaffold0334 (1 HSPs)
scaffold0334 (88-170)||(12548-12629)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 37 - 307
Target Start/End: Complemental strand, 26906378 - 26906112
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| | ||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||| ||| ||||||| |      
T  26906378 tggtgtgaccaagaacttatagtgctagtcagaagtttctgttaacaagatattataatggataatctcacacgaggtatgggg-actagaagtagcctg 26906280  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaata 236  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||  |||||||||||||||||||| |||||    
T  26906279 gtttggtgaaccaggataaatctcgtgtgttattcttcttccctttctctttttatttaaa-ttacactata--cacacacaatcacaatcatattaata 26906183  T
Q  237 tttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26906182 tttattaatctttccagaatattctggtcctaattaatcacaaccaaattaatccagagttctctggtcct 26906112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 5378557 - 5378296
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| ||||||| ||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||    
T  5378557 tggtgtgatcaagaccttatagtgctagttagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtgggg-actggaagtagccg 5378459  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaat 235  Q
     ||||| |||||||| |||| |||| ||||||||||||||||||| |||| |||||||||||| ||||  |||||||||||| |||||| ||||| ||||    
T  5378458 ggtttggtgaaccaggataattctcctgtgttattcttcttccctttctc-ttttatttaaagctacataatatacacacactatcacactcatattaat 5378360  T
Q  236 atttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctct 301  Q
    |||||||||||||  || |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5378359 atttattaatctc--cagaatattctggtcttaattaatcacaaccaaattaatctagagttctct 5378296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 307
Target Start/End: Original strand, 21633635 - 21633901
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| | ||||| ||| || ||||||||||||||||||  ||| |  |||||||||||||||||||||||  | |||||||| ||| || |||| ||     
T  21633635 tggtgtgaccaagaccttataatgctagtcagaagtttctactagtagaatactatagtggataatctcacaaaaagtgtgggg-actagacgtagccgg 21633733  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaata 236  Q
    ||||| ||||||||||||  | |||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||| |||||| ||||| |||||    
T  21633734 gtttggtgaaccagaatatttatcttgtgttattcttcttccctttctctttttatttaa-gttacacaatacacacacactatcacactcatattaata 21633832  T
Q  237 tttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  21633833 tttattaatctc--cagaatattctagtcctaattaatcacaaccaaattaatccagagttctctgatcct 21633901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 307
Target Start/End: Complemental strand, 15810117 - 15809846
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagat-actatagtggataatctcacacgaggtgtgggg----ga---ctggaa 128  Q
    |||||| ||||||| ||| |||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||||||||||    ||   ||||||    
T  15810117 tggtgtgatcaagaccttatagtgctactcagaagtttctgttaccaagataattatagtggataatctcacacgaggtgtggggactcgaactctggaa 15810018  T
Q  129 gtagtcgagtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatca 228  Q
    |||||||  |||| |||||||| |||| |||||||||||||| ||||   ||||||||||||||||||||||||||   |||||||||| ||| ||        
T  15810017 gtagtcggatttggtgaaccaggataattctcttgtgttattattct---ctctctctttttatttaaagttacac--aatacacacactatctcatctg 15809923  T
Q  229 tactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    || |||||||||||||||||  || |||||||||||  ||||||||||| |  |||||||| |||||||||||| ||||    
T  15809922 tattaatatttattaatctc--cagaatattctggtaataattaatcactataaaattaatacagagttctctgatcct 15809846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 40999168 - 40999034
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| ||||| | ||| |||||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  40999168 tggtgtgatcaaaaccttatagtgctagtcataagtttccgttagcaagacaactatagtggataatctcacacgaggtgt-ggggactggaagttgtcg 40999070  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattc 171  Q
     ||||| |||||||| |||| |||  ||||||||||    
T  40999069 ggtttggtgaaccaggataactcttatgtgttattc 40999034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 14272101 - 14272016
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  14272101 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14272016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 14281967 - 14281888
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgt 166  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |||||||| |||| |||| |||||    
T  14281967 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 14281888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 14271935 - 14271885
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  14271935 attctggtcctaattaatctcaaccatattaatccagagttctctggtcct 14271885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 14281802 - 14281752
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  14281802 attctggtcctaattaatctcaaccatattaatccagagttctctggtcct 14281752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 29029943 - 29029843
Alignment:
Q  207 tatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcc 306  Q
    ||||||||||| ||||| || ||| | ||  |||||||||| | || || ||||| ||| ||||||| |||||||||||||||| ||||||||||| |||    
T  29029943 tatacacacactatcacgattataattattattattaatctatccataacattctagtcataattaaacacaaccaaattaatctagagttctctggtcc 29029844  T
Q  307 t 307  Q
    |    
T  29029843 t 29029843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 21919512 - 21919431
Alignment:
Q  88 actatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||  || | |||| ||| |||| |||| |||||||||    
T  21919512 actatagtggataatctcacacgaagtgt-ggggactggaagtagccggattgggtgaatcaggataactctcctgtgttatt 21919431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 40998961 - 40998913
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||| ||||||||||||||| | ||||||||||||||||| ||||    
T  40998961 aatattctagtcctaattaatcactatcaaattaatccagagttttctg 40998913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 3470840 - 3470798
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttct 299  Q
    ||||||||||||||||||| ||| || ||||||||||||||||    
T  3470840 attctggtcctaattaatctcaatcatattaatccagagttct 3470798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 3471020 - 3470952
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataa 155  Q
    |||||| |||||||||||||||| || ||||||||| |||||||||  || ||||| |||||||| ||||    
T  3471020 atactacagtggataatctcacatgaagtgtggggg-ctggaagtaaccgggtttggtgaaccaggataa 3470952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 28310144 - 28310080
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataa 101  Q
    |||||| ||||| ||||| ||||| || || ||||||| || ||||| |||||||||||||||||    
T  28310144 tggtgtgatcaacaacttatagtgttattcggaagtttttgatagcaggatactatagtggataa 28310080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 302
Target Start/End: Original strand, 14273255 - 14273521
Alignment:
Q  33 gatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagta 131  Q
    |||||||||| || |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |||| |||||    
T  14273255 gatatggtgtgattaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtggag-actgaaagta 14273353  T
Q  132 gtcgagtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatac 231  Q
    | || ||||| |||||||| |||| |||| ||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||| |||||  |||||     
T  14273354 gccgggtttggtgaaccaggataattctcgtgtgttattcttcttccctttctctttt-atttaaagctacacaatatacacacactatcacgctcatat 14273452  T
Q  232 taatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||||||||| ||  || ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  14273453 taatatttattaatatc--cagaatattctggtcctaatcaatcacaaccaaattaatccagagttatctg 14273521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 99 - 294
Target Start/End: Original strand, 29911278 - 29911470
Alignment:
Q  99 taatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaag 198  Q
    ||||||||||||||||| |||| |||||||| ||  |  |||| | |||||  ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  29911278 taatctcacacgaggtgagggg-actggaagcagctggatttggttaaccatgataaatctcatgtgttattcttcttccctttctctttttatttaaag 29911376  T
Q  199 ttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccaga 294  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||    
T  29911377 ttacactatatacac--acaatcacaatcatactaatatttattaatctctccataatattgttgtcctaattaatcacaaccaaattaatccaga 29911470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 31710634 - 31710461
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggat 99  Q
    |||||||||||||||||| |||  || |||  ||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  31710634 gctgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggat 31710536  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    ||||||||||||||||| ||||||||||||||| || ||||| ||||| || |||| |||| ||||||||||||||    
T  31710535 aatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaacaaggataactctcatgtgttattcttct 31710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 175
Target Start/End: Complemental strand, 24022908 - 24022737
Alignment:
Q  3 tgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataa 101  Q
    |||||||||||||||| |||  || |||  ||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  24022908 tgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataa 24022810  T
Q  102 tctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    ||||||||||||||| ||| | ||||||||| || ||||| ||||| || |||| ||||   ||||||||||||    
T  24022809 tctcacacgaggtgt-gggaattggaagtagccgggtttggtgaacgaggataactctccaatgttattcttct 24022737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 18578707 - 18578877
Alignment:
Q  3 tgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataat 102  Q
    |||||||||||||||| |||  ||  ||| | | |||||| ||||||||||| |||| ||||||| ||||||||||||| | |||| ||  ||| |||||    
T  18578707 tgaggttgataatacagggtgtaacagattggtctggtgttatcaagaacttatagtcctagtcaaaagtttctgttaggaggatattactgtgaataat 18578806  T
Q  103 ctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttc 174  Q
    ||||||| |||||| |||||||| ||||||||| |||||||||||  | ||||||||| |||||||||||||    
T  18578807 ctcacacaaggtgt-ggggactgaaagtagtcgggtttgatgaacatggataaatctcatgtgttattcttc 18578877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 35877620 - 35877852
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt-------cc 178  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| | |||||||||| ||       ||    
T  35877620 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctatgttattcttatttctctctcc 35877718  T
Q  179 ctctctctttttat---------ttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaa 269  Q
    |||||||| | | |         |||   |||||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||    
T  35877719 ctctctctctctctctctctcttttatttttacacgatatgcacacactatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaa 35877814  T
Q  270 ttaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35877815 ttaatcacaaccaaattaatccagagttctctggtcct 35877852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 35885109 - 35885341
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt-------cc 178  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| | |||||||||| ||       ||    
T  35885109 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctatgttattcttatttctctctcc 35885207  T
Q  179 ctctctctttttat---------ttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaa 269  Q
    |||||||| | | |         |||   |||||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||    
T  35885208 ctctctctctctctctctctcttttatttttacacgatatgcacacactatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaa 35885303  T
Q  270 ttaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35885304 ttaatcacaaccaaattaatccagagttctctggtcct 35885341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 36724822 - 36725054
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt-------cc 178  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| | |||||||||| ||       ||    
T  36724822 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctatgttattcttatttctctctcc 36724920  T
Q  179 ctctctctttttat---------ttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaa 269  Q
    |||||||| | | |         |||   |||||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||    
T  36724921 ctctctctctctctctctctcttttatttttacacgatatgcacacactatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaa 36725016  T
Q  270 ttaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  36725017 ttaatcacaaccaaattaatccagagttctctggtcct 36725054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1800510 - 1800629
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  1800510 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggata 1800609  T
Q  101 atctcacacgaggtgtgggg 120  Q
    ||||||||||  ||||||||    
T  1800610 atctcacacgtagtgtgggg 1800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 22632419 - 22632538
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || ||||| |||||||||||||||| ||||| ||||||||||||||||    
T  22632419 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgttagtcagaagtttctgatagcaggatactatagtggata 22632518  T
Q  101 atctcacacgaggtgtgggg 120  Q
    ||||||||||  ||||||||    
T  22632519 atctcacacgtagtgtgggg 22632538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 3397027 - 3397108
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgtta 168  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||  | ||||| |||||||  |||| |||| |||||||    
T  3397027 atactatagtggataatctcacacgaagtgt-ggggactagaagtagctgggtttggtgaaccatgataactctcctgtgtta 3397108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 3397223 - 3397273
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||| ||||    
T  3397223 attctagtcctaattaatctcaaccatattaatccagagttctctggtcct 3397273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 16446668 - 16446716
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||||    
T  16446668 atactatagtggataatctcacacgaaatgt-ggggactgaaagtagtcg 16446716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 45 - 299
Target Start/End: Original strand, 15834014 - 15834266
Alignment:
Q  45 tcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatg 144  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || |||| |||||| ||  |||| ||    
T  15834014 tcaagaacttatagtgctagtcagaagtttcagttagcatgatactataatggataatctcacacgaggtgtgtgg-actgaaagtagccggatttggtg 15834112  T
Q  145 aaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaatatttattaa 244  Q
    |||||  ||||||||||||||||||  ||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||| || ||||||||||    
T  15834113 aaccaagataaatctcttgtgttataattcttccctttctctttttgtttaa-gttacactatttacacacacaatcacaatcatattattatttattaa 15834211  T
Q  245 tctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttct 299  Q
    |||||  | |||||||| || ||||||||||||||||||||||||||| ||||||    
T  15834212 tctctctagaatattctagtactaattaatcacaaccaaattaatccatagttct 15834266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 24096241 - 24096077
Alignment:
Q  3 tgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataat 102  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  24096241 tgaggttgataatacaagg-aaaatggactgatatggtgtaatcaagaacttgtagtgctagtcaaaagtttatgttagcaagatactatagtggataat 24096143  T
Q  103 ctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgtta 168  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  24096142 ctcacacgaggtgtgggggactggaagtagtcgagtttggtgaaccagaataaatctcctgtgtta 24096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 248
Target Start/End: Complemental strand, 7789211 - 7789001
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||    
T  7789211 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtgggg-actggaagtagccg 7789113  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaat 235  Q
     ||||| ||||||||||||| |||| |||||||||||||||| || |||| |||||||||||| ||||| |||||||||||| |||||| |||||  |||    
T  7789112 ggtttggtgaaccagaataattctcctgtgttattcttcttctctttctc-ttttatttaaagctacacaatatacacacactatcacactcatatgaat 7789014  T
Q  236 atttattaatctc 248  Q
    |||||||||||||    
T  7789013 atttattaatctc 7789001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 24096079 - 24095963
Alignment:
Q  193 ttaaagttacactatatacacacacaa--tcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatc 290  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24096079 ttaaagttacactacatacacacacaaaatcacaatcatactaatatttattaatctcttcagaatattctggtcctaattaatcacaaccaaattaatc 24095980  T
Q  291 cagagttctctgctcct 307  Q
    ||||||| |||| ||||    
T  24095979 cagagttttctggtcct 24095963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 31575543 - 31575272
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| ||||||| ||| |||||||||| ||||||||||  ||||   |||||||||||||||||||||||||| |||| ||||||||||||||| ||     
T  31575543 tggtgtgatcaagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatctcacacgaagtgt-ggggactggaagtagccgg 31575445  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattctt-cttccctctctctttttatttaa--agttacactatatacacacaca------atcacaatc 227  Q
     |||| |||||||| |||| |||||||||||||| || |||| |||||| | | | ||| |    |||||  ||| |||||||||      |||||| ||    
T  31575444 atttggtgaaccaggataactctcttgtgttattgttccttctctctctatctctcttttattttttacataatacacacacacacacactatcacactc 31575345  T
Q  228 atactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    ||| ||||||||||||| |||  || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31575344 atattaatatttattaacctc--cagaatattctggtcctaattaatcataaccaaattaatccagagttctctg 31575272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 20030283 - 20030505
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-----tccct 180  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||||||||||||||||||     |||||    
T  20030283 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcttgtgttattcttctttctctccct 20030381  T
Q  181 ctctct-ttttatttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaa 279  Q
    |||||| | |  ||||   |||||| |||| |||||||  |||||| |||  ||||||||||| |||||  || ||| ||||| ||||||||||||||||    
T  20030382 ctctctctatcttttatttttacacgatattcacacactgtcacaagcat--taatatttatttatctc--cagaatgttctgttcctaattaatcacaa 20030477  T
Q  280 ccaaattaatccagagttctctgctcct 307  Q
     |||||||||||||||||||||| ||||    
T  20030478 acaaattaatccagagttctctggtcct 20030505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 20714124 - 20714262
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||||| ||||||||||||||| ||    
T  20714124 tggtgtgatcaagatcttatagtgctagtcagaagtttctgttagcaagacaactataatggataatgtcacacgaggtgt-ggggactggaagtagccg 20714222  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  20714223 ggtttggtgaaccaggataactctcatgtgttattcttct 20714262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 307
Target Start/End: Complemental strand, 42712261 - 42712033
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttcttcc------- 178  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| ||||||||||||||| |           
T  42712261 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctttctctctct 42712163  T
Q  179 ----ctctctctttttatttaaagtt-acactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaa 273  Q
        |||||||| | | ||| |  || |||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||||||    
T  42712162 ctctctctctctctctcttttatttttacacgatatgcacacactatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaattaa 42712067  T
Q  274 tcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||||||||||||| ||||    
T  42712066 tcacaaccaaattaatccagagttctctggtcct 42712033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 24634023 - 24634146
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| ||||||| ||| |||||||||| ||||||||||  ||||   ||||||||||||||||| |||||||| |||| ||||||||||||||||||     
T  24634023 tggtgtgatcaagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatatcacacgaagtgt-ggggactggaagtagtcgg 24634121  T
Q  137 gtttgatgaaccagaataaatctct 161  Q
    |||||| ||||||| |||| |||||    
T  24634122 gtttgaggaaccaggataactctct 24634146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 12915563 - 12915648
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  12915563 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 12915648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 12925458 - 12925543
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||  |||||||| |||| |||| |||||||||||    
T  12925458 atactatagtggataatctcacacgaagtgt-ggggactggaagtagtcgggtttcgtgaaccaggataactctcctgtgttattct 12925543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 20044922 - 20045011
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    ||||||| |||||||||||||||||| |||||||| |||||| |||| || ||||| |||||||| |||| |||| |||||||||||||||    
T  20044922 atactatcgtggataatctcacacgaagtgtgggg-actggatgtagccgggtttggtgaaccaggataactctcatgtgttattcttctt 20045011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 33601903 - 33601768
Alignment:
Q  39 gtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagt 138  Q
    |||| ||||||| ||| ||||| | ||||||||||||||| | |   | |||||||||||||||||||||||| |||| ||||||||||||||| ||  |    
T  33601903 gtgtgatcaagaccttatagtgttggtcagaagtttctgtcaactgaaaactatagtggataatctcacacgaagtgt-ggggactggaagtagccggat 33601805  T
Q  139 ttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    | | |||||||| |||| |||| ||||||||| ||||    
T  33601804 tgggtgaaccaggataactctcctgtgttatttttct 33601768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 26193968 - 26193875
Alignment:
Q  210 acacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||||||||||||||  |||  ||||||||||| |||||  || |||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  26193968 acacacacaatcacacacat--taatatttatttatctc--caaaatattatggtcctaattaattacaaccagattaatccagagttctctggtcct 26193875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 33592264 - 33592134
Alignment:
Q  39 gtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagt 138  Q
    |||| ||||||| ||| ||||| | ||||||||||||||| | |   | |||||||||||||||||||||||| |||| ||||||||||||||| ||  |    
T  33592264 gtgtgatcaagaccttatagtgttggtcagaagtttctgtcaactgaaaactatagtggataatctcacacgaagtgt-ggggactggaagtagccggat 33592166  T
Q  139 ttgatgaaccagaataaatctcttgtgttatt 170  Q
    | | |||||||| |||| |||| |||||||||    
T  33592165 tgggtgaaccaggataactctcctgtgttatt 33592134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 18883243 - 18883163
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgtt 167  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| |||| ||||||    
T  18883243 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctcctgtgtt 18883163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 18143509 - 18143427
Alignment:
Q  89 ctatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||  |||| |||| |||||||||||    
T  18143509 ctatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaagataactctcctgtgttattct 18143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 4843805 - 4843720
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||  |||||||| |||| |||| | |||||||||    
T  4843805 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttagtgaaccaggataactctcctttgttattct 4843720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 12767889 - 12767993
Alignment:
Q  199 ttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttc 298  Q
    |||||| |||| ||||||| ||||||  |||  ||||||||||| ||||||  |  |||| || ||||||||||||||||| ||||||||||||||||||    
T  12767889 ttacacaatatgcacacactatcacacgcat--taatatttatttatctct--aagatatactcgtcctaattaatcacaatcaaattaatccagagttc 12767984  T
Q  299 tctgctcct 307  Q
    |||| ||||    
T  12767985 tctggtcct 12767993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 12915727 - 12915777
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  12915727 attctggtcctaattaatctcaaccatattaatccagagttctctggtcct 12915777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 18233031 - 18233104
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctc 160  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| ||||    
T  18233031 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctc 18233104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 18242482 - 18242555
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctc 160  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| ||||    
T  18242482 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctc 18242555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 20047430 - 20047517
Alignment:
Q  216 acaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||||||||| |||  ||||||||||| |||||  || ||| || || |||||||||||||||| |||||||||||||||||||||| ||||    
T  20047430 acaatcacaagcat--taatatttatttatctc--cagaatgttatgttcctaattaatcacaaacaaattaatccagagttctctggtcct 20047517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 20714417 - 20714484
Alignment:
Q  104 tcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    ||||||||||||||||| ||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  20714417 tcacacgaggtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcatgtgttattct 20714484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 25037109 - 25037026
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| |   || | |||||||  |||| ||||||||||||||    
T  25037109 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccagattgggtgaaccaagataactctcttgtgttatt 25037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 25051146 - 25051063
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| |   || | |||||||  |||| ||||||||||||||    
T  25051146 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccagattgggtgaaccaagataactctcttgtgttatt 25051063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 18143321 - 18143274
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctct 301  Q
    |||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  18143321 aataatctggtccaaattaatcacaaccatattaatccagagttctct 18143274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 18251933 - 18251978
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtag 132  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||    
T  18251933 atactatagtggataatctcacacgaagtgt-ggggactggaagtag 18251978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 12767735 - 12767826
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggac--tggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    ||||||||||||||||||||||||||  ||| ||||||  ||||||||  || | ||| |||||||| |||| |||| |||||||||||||||    
T  12767735 atactatagtggataatctcacacgaaatgt-ggggactgtggaagtaaccgggattggtgaaccaggataactctcctgtgttattcttctt 12767826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 18883059 - 18883006
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||| |||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  18883059 aataatctggtccaaattaatcataaccatattaatccagagttctctggtcct 18883006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 4843600 - 4843560
Alignment:
Q  268 aattaatcacaaccaaattaatccagagttctctgctcctc 308  Q
    ||||||||||||||| |||||||||||||||| || |||||    
T  4843600 aattaatcacaaccatattaatccagagttctttggtcctc 4843560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 11421583 - 11421322
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| ||||||| ||| ||||| ||||||||| ||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| ||     
T  11421583 tggtgtgatcaagatcttatagtgttagtcagaattttttgttaacatgatactatagtggataatctcacacgaggtgt-ggggactggaagtagccgg 11421485  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaata 236  Q
     |||||||||| || |||| | |||||||||||| ||||||| | ||||||||||||| ||||||||  |||||||||||| |||||| ||||| |||||    
T  11421484 atttgatgaactaggataattatcttgtgttattgttcttccatttctctttttattt-aagttacatgatatacacacactatcacactcatattaata 11421386  T
Q  237 tttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    ||||||||||||  || |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  11421385 tttattaatctc--cagaatattatggtactaattaatcacaaccaaattaatccagagttctctg 11421322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 44 - 302
Target Start/End: Original strand, 14102369 - 14102624
Alignment:
Q  44 atcaagaacttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttga 142  Q
    ||||||| |||  ||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||| || |||||     
T  14102369 atcaagaccttacagtgctagtcaaaagtttctgttagcaagacaactatagtggataatctcacaagaggtgtgggg-actggaagtagccgggtttgg 14102467  T
Q  143 tgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaatatttatt 242  Q
    |||||||| |||| |||   |||||||||||||||||| |||||||| |||||| | ||||| |||||||||||| |||||| ||||| |||||||||||    
T  14102468 tgaaccaggataattcttcagtgttattcttcttccctttctctttt-atttaaggctacacaatatacacacactatcacactcatattaatatttatt 14102566  T
Q  243 aatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||  | |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  14102567 aatctct--agaatattcttgccctaattaatcacaaccaaattaatccagagttctctg 14102624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 23895784 - 23895611
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggat 99  Q
    |||||||||||||||||| |||  || |||  ||| |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  23895784 gctgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggat 23895686  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |||||||| |||| |||| ||||||||||||||    
T  23895685 aatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 23895611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18420571 - 18420787
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggat 99  Q
    |||||||||||||||||| |||  || |||  ||| |||||| |||||||  |  |||||||||||||||||||||||||||||| | ||||||||| ||    
T  18420571 gctgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatttgttagtgctagtcagaagtttctgttagcaagaaaactatagtgtat 18420669  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct---tccctctctctttttatttaa 196  Q
    |||||||||||||||||  |||||||||||||| || ||||  |||||||| |||| | || ||||||||||||||   || |||||||| |||||||||    
T  18420670 aatctcacacgaggtgt-cgggactggaagtagccgggttttgtgaaccaggataactatcctgtgttattcttctctctctctctctctctttatttaa 18420768  T
Q  197 agttacactatatacacac 215  Q
    |||||||| | ||||||||    
T  18420769 agttacacaacatacacac 18420787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 12173476 - 12173629
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| |||||||| || | |||||||||| ||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||| |||||| |||    
T  12173476 tggtgtgatcaagaatttatggtgctagtcataagtttctgttagcatgatactatagtggataatcttacacaaggtgt-ggggactgaaagtagccga 12173574  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattcttcttccctctctcttttta 191  Q
    ||||| ||||| |  |||||||||  |||||||||||||||||| ||||| ||||    
T  12173575 gtttggtgaactatgataaatctcaggtgttattcttcttccctttctctcttta 12173629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 10259945 - 10259779
Alignment:
Q  3 tgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataat 102  Q
    ||||||| |||||||| |||  || |||  ||| |||||| |||||||| || ||||||||||||||||||||| |||||| |||||||||||||| |||    
T  10259945 tgaggtttataatacagggtgtaacggactgatctggtgtgatcaagaatttatagtgctagtcagaagtttctcttagcaggatactatagtggagaat 10259846  T
Q  103 ctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    | ||||||| |||| | |||||||||||||  |  |||| ||||||||||||| |||| |||||||||    
T  10259845 cccacacgaagtgt-gaggactggaagtagctggatttggtgaaccagaataattctcctgtgttatt 10259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 301
Target Start/End: Complemental strand, 17512306 - 17512088
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-------tcc 178  Q
    ||||||||||||||||||||||| || |||||||| |||| |||||| |||||||| |||||||| |||| |||  ||||||||||||||       | |    
T  17512306 atactatagtggataatctcacaagaagtgtgggg-actgaaagtagccgagtttggtgaaccaggataactcttctgtgttattcttctttctctcttc 17512208  T
Q  179 ctctctct-ttttatttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcac 277  Q
    |||||||| | |  ||||   |||||| |||| ||||||| |||||||   || ||||||||||| |||||  || ||| ||||||||| ||||||||||    
T  17512207 ctctctctctatcttttacttttacacgatatgcacacactatcacaa--gtattaatatttatttatctc--cagaatgttctggtccaaattaatcac 17512112  T
Q  278 aaccaaattaatccagagttctct 301  Q
    ||||||||||||||||||||||||    
T  17512111 aaccaaattaatccagagttctct 17512088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 23110351 - 23110257
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtag 132  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||   ||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  23110351 tggtgtgatcaagaacatatagtgctagtcagaagtttctgttagccgaatactatagtggataatctaacacggggtgt-ggggactggaagtag 23110257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 22066397 - 22066482
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  22066397 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 22066482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 2850722 - 2850782
Alignment:
Q  247 tcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| ||||    
T  2850722 tcttcagaatattctggtcctaattaatcaaaaccaaattaattcagagttctctggtcct 2850782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 8668733 - 8668629
Alignment:
Q  199 ttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttc 298  Q
    |||||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || |||  ||| || |||||||||||||||||||||||||||||||||    
T  8668733 ttacacgatatgcacacactatcacaagcat--taatatttatttatctc--cagaatgctctagtactaattaatcacaaccaaattaatccagagttc 8668638  T
Q  299 tctgctcct 307  Q
    |||| ||||    
T  8668637 tctggtcct 8668629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 23884596 - 23884677
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgtta 168  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||||| || ||||| |||||||| |||| |||| |||||||    
T  23884596 atactatagtggacaatctcacacgaagtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgtta 23884677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 12173628 - 12173688
Alignment:
Q  232 taatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatcca 292  Q
    ||||| ||| |||||||| || |||||| ||||||||||||||||||| ||||||||||||    
T  12173628 taatacttaataatctctccaaaatattgtggtcctaattaatcacaatcaaattaatcca 12173688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 248
Target Start/End: Original strand, 3588 - 3798
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||    
T  3588 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgtgggg-actggaagtagccg 3686  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaat 235  Q
     ||||| ||||||||||||| |||| |||||||||||||||| || |||| |||||||||||| ||||| |||||||||||| |||||| |||||  |||    
T  3687 ggtttggtgaaccagaataattctcctgtgttattcttcttctctttctc-ttttatttaaagctacacaatatacacacactatcacactcatatgaat 3785  T
Q  236 atttattaatctc 248  Q
    |||||||||||||    
T  3786 atttattaatctc 3798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 42732709 - 42732445
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| ||||||| ||| |||||||||| ||||||||||  ||||   |||||||||||||||||||||||||| |||| ||||||||||||||| ||     
T  42732709 tggtgtgatcaagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatctcacacgaagtgt-ggggactggaagtagccgg 42732611  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattcttc-ttccctctctct-ttttatttaaagttacactatatacacacacaatcacaatcatactaa 234  Q
    ||||| |||||||| |||| |||||||||||||||||| ||| |||||| | | |  ||||   |||||  |||||||||||| |||||| ||||| |||    
T  42732610 gtttggtgaaccaggataactctcttgtgttattcttctttctctctctatctctcttttatttttacataatatacacacactatcacactcatattaa 42732511  T
Q  235 tatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42732510 tatttattaatctc--cagaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 42732445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 18569094 - 18569229
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  18569094 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 18569192  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattct 172  Q
     ||||| |||||||| |||| |||| |||||||||||    
T  18569193 ggtttggtgaaccaggataactctcctgtgttattct 18569229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 22489205 - 22489378
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggat 99  Q
    |||||||||||||||||| |||  || |||  ||| |||||| ||||||| ||| |||||||||||| ||||||||||||||||||  ||||||||||||    
T  22489205 gctgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatcttatagtgctagtcataagtttctgttagcaagacaactatagtggat 22489303  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |||||||| |||| |||| ||||||||||||||    
T  22489304 aatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttct 22489378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 24412883 - 24413021
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  24412883 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 24412981  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
      |||| |||||||| |||| |||| ||||||||||||||    
T  24412982 gatttggtgaaccaggataactctcctgtgttattcttct 24413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 24422332 - 24422470
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  24422332 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 24422430  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
      |||| |||||||| |||| |||| ||||||||||||||    
T  24422431 gatttggtgaaccaggataactctcctgtgttattcttct 24422470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 30454334 - 30454196
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  30454334 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 30454236  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||| ||||    
T  30454235 ggtttggtgaaccaggataactctcctgtgttatttttct 30454196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 30459392 - 30459254
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  30459392 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 30459294  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||| ||||    
T  30459293 ggtttggtgaaccaggataactctcctgtgttatttttct 30459254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 30444997 - 30444829
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggat 99  Q
    |||||||||||||||||| |||   |||||  ||| |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  30444997 gctgaggttgataataca-ggtgttatggactgatctggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggat 30444899  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |||| ||| |||| |||| |||||||||    
T  30444898 aatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaatcaggataactctcctgtgttatt 30444829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 11223479 - 11223705
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-------tcc 178  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||| ||| |||||||||||||||       ||     
T  11223479 atactataatggataatctcacacgaagtgtgggg-actggaagtagccgagtttggtgaaccaggataactcttttgtgttattcttctccctctctct 11223577  T
Q  179 ctctctcttttta---tttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatc 275  Q
    |||||||| | ||   ||||   |||||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||||||||    
T  11223578 ctctctctctctatcttttatttttacacgatatgcacacactatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaattaatc 11223673  T
Q  276 acaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||||||||||| ||||    
T  11223674 acaaccaaattaatccagagttctctggtcct 11223705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 26652670 - 26652812
Alignment:
Q  33 gatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtag 132  Q
    |||||||||| ||||||| ||  |||||||||| |||||||||| |||||   |||||||||||||| ||||||||||| |||| |||||||||||||||    
T  26652670 gatatggtgtgatcaagacctaatagtgctagttagaagtttctattagctgaatactatagtggattatctcacacgaagtgt-ggggactggaagtag 26652768  T
Q  133 tcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    ||  ||||| |||||||| |||| |||| |||||||||||||||    
T  26652769 tcaggtttggtgaaccagcataactctcctgtgttattcttctt 26652812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 26924255 - 26924397
Alignment:
Q  33 gatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtag 132  Q
    |||||||||| ||||||| ||  |||||||||| |||||||||| |||||   |||||||||||||| ||||||||||| |||| |||||||||||||||    
T  26924255 gatatggtgtgatcaagacctaatagtgctagttagaagtttctattagctgaatactatagtggattatctcacacgaagtgt-ggggactggaagtag 26924353  T
Q  133 tcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    ||  ||||| |||||||| |||| |||| |||||||||||||||    
T  26924354 tcaggtttggtgaaccagcataactctcctgtgttattcttctt 26924397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 4635996 - 4636134
Alignment:
Q  33 gatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagta 131  Q
    |||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||  ||||||||||||||||||||  ||||||| |||||||| || ||    
T  4635996 gatatggtgtgatcaagatcttatagtgctggtcagaagtttctgttagcaagacaactatagtggataatctcacgtgaggtgt-ggggactgaaaata 4636094  T
Q  132 gtcgagtttgatgaaccagaataaatctcttgtgttattc 171  Q
    | || ||||| |||||||| |||| |||| ||||||||||    
T  4636095 gccgggtttggtgaaccaggataactctcatgtgttattc 4636134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 37514971 - 37514856
Alignment:
Q  57 agtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaa 156  Q
    |||| |||||| || ||| ||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||  ||||||||||||| |||||    
T  37514971 agtgttagtcaaaaatttatgtcagcaagatactatagtggataatctcacacaaggtgt-ggggactagaagtagccggctttgatgaaccagtataaa 37514873  T
Q  157 tctcttgtgttattctt 173  Q
    |||| ||||||||||||    
T  37514872 tctcatgtgttattctt 37514856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 26652878 - 26652968
Alignment:
Q  210 acacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||| |||||| ||||| |||||||||||||||||  || |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  26652878 acacacactatcacactcatattaatatttattaatctc--cagaatattatggtcctaattaatcacaaccaaattaatctagagttctctg 26652968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 26924463 - 26924553
Alignment:
Q  210 acacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||| |||||| ||||| |||||||||||||||||  || |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  26924463 acacacactatcacactcatattaatatttattaatctc--cagaatattatggtcctaattaatcacaaccaaattaatctagagttctctg 26924553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 22118235 - 22118137
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| ||||||| ||| ||||| || ||||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  22118235 tggtgtgatcaagaccttatagtgttattcagaagtttctgttagcaagacaactataatggataatctcacacgaggtgt-ggggactggaagtagtcg 22118137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5600597 - 5600716
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  5600597 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggata 5600696  T
Q  101 atctcacacgaggtgtgggg 120  Q
    |||||||||| |||||||||    
T  5600697 atctcacacgtggtgtgggg 5600716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5610243 - 5610362
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  5610243 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggata 5610342  T
Q  101 atctcacacgaggtgtgggg 120  Q
    |||||||||| |||||||||    
T  5610343 atctcacacgtggtgtgggg 5610362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 22118005 - 22117913
Alignment:
Q  208 atacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||||| |||||| | ||| |||||| |||||||||  ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  22118005 atacacacactatcacacttatattaatatctattaatct--tcaaaatattcaggtcctaattaatcacaatcaaattaatccagagttctctg 22117913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 33955583 - 33955498
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  33955583 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 33955498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 31150803 - 31150684
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  31150803 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggata 31150704  T
Q  101 atctcacacgaggtgtgggg 120  Q
    ||||||||||  ||||||||    
T  31150703 atctcacacgtagtgtgggg 31150684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 22448413 - 22448330
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  || | |||||||| |||| ||||||||||||||    
T  22448413 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggattgggtgaaccaggataactctcttgtgttatt 22448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 13815456 - 13815371
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||| ||  |||| |||||||| |||| |||| |||||||||||    
T  13815456 atactatagtggataatctcacatgaagtgtgggg-actggaagtagccggatttggtgaaccaggataactctcctgtgttattct 13815371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 20036103 - 20036188
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||| || ||||| |||||||| |||| |||| | |||||||||    
T  20036103 atactatagtggataatctcacatgatgtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctatgttattct 20036188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 20834535 - 20834614
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgt 166  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||| || ||||| |||||||| |||| |||| |||||    
T  20834535 atactatagtggataatctcacacggagtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgt 20834614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 24244126 - 24244053
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctc 160  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| ||||    
T  24244126 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctc 24244053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 24290750 - 24290677
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctc 160  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| ||||    
T  24290750 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctc 24290677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 33955402 - 33955349
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||    
T  33955402 aatattctggttctaattaatctcaaccatattaatccagagttctctggtcct 33955349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 13815265 - 13815211
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcctc 308  Q
    |||| |||||||| ||||||||||||||| ||||||||| ||||||||| |||||    
T  13815265 aataatctggtccaaattaatcacaaccatattaatccatagttctctggtcctc 13815211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 20038485 - 20038535
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| |||||| |||||| |||||||||||| ||||    
T  20038485 attctggtcctaattaatctcaaccatattaatgcagagttctctggtcct 20038535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 20036287 - 20036337
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||| ||||||||||| | |||||| ||||||||||||||||||| ||||    
T  20036287 attctagtcctaattaacctcaaccatattaatccagagttctctggtcct 20036337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 24794679 - 24794511
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  24794679 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 24794581  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct-tccctctctctttttatttaaagttacac 204  Q
     ||||| |||||||| |||| |||| |||||||||||||| || |||||||| |||||||||||||||||    
T  24794580 ggtttggtgaaccaggataactctcctgtgttattcttctctctctctctctctttatttaaagttacac 24794511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 70 - 302
Target Start/End: Complemental strand, 7784089 - 7783863
Alignment:
Q  70 agtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgtta 168  Q
    ||||||||||||||||| | || ||||||||||||||||| | ||||||||  |||||||||||||  ||||| |||||||||| |  |||| |||||||    
T  7784089 agtttctgttagcaagacaactgtagtggataatctcacatgtggtgtggga-actggaagtagtcaggtttggtgaaccagaacagttctcctgtgtta 7783991  T
Q  169 ttcttcttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtccta 268  Q
    |||||||||||| |||||||  |||||||| ||||| ||| |||||||| |||||| ||||  |||||||||||||||||  || |||||||||||||||    
T  7783990 ttcttcttccctttctcttt--atttaaagctacacaatacacacacactatcacactcat--taatatttattaatctc--cagaatattctggtccta 7783897  T
Q  269 attaatcacaaccaaattaatccagagttctctg 302  Q
    ||||||||||||||| |||||| |||||||||||    
T  7783896 attaatcacaaccaatttaatcaagagttctctg 7783863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 28351853 - 28351715
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  28351853 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 28351755  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  28351754 ggtttggtgaaccagcataactctcctgtgttattcttct 28351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 28367786 - 28367648
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  28367786 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 28367688  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  28367687 ggtttggtgaaccaggataactctcctgtgttattcttct 28367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 28375604 - 28375466
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  28375604 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 28375506  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  28375505 ggtttggtgaaccaggataactctcctgtgttattcttct 28375466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 28383426 - 28383288
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  28383426 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 28383328  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  28383327 ggtttggtgaaccaggataactctcctgtgttattcttct 28383288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 86 - 307
Target Start/End: Complemental strand, 13328361 - 13328139
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-----tccct 180  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||  |||| |||| ||||||||| ||||     |||||    
T  13328361 atactatagtggataatctcacacgaagtgtgggg-actggaagtagtcgggtttggtgaaccaagataactctcctgtgttattattctttctctccct 13328263  T
Q  181 ctctctttttatttaaagt-tacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaa 279  Q
    |||||| | | ||| |  | ||||| |||| ||||||| ||||||  |||  ||||||||||| |||||  || ||| ||||||||||||||||||||||    
T  13328262 ctctctctatcttttatttgtacacgatattcacacactatcacaggcat--taatatttatttatctc--cagaatgttctggtcctaattaatcacaa 13328167  T
Q  280 ccaaattaatccagagttctctgctcct 307  Q
     |||||||||||||||||||||| ||||    
T  13328166 tcaaattaatccagagttctctggtcct 13328139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 4951663 - 4951802
Alignment:
Q  52 cttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccag 150  Q
    ||||||||||||||||||| |||||||||||||||  | ||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||     
T  4951663 cttgtagtgctagtcagaaatttctgttagcaagacaaatatagtggataatctcacacgaggtgt-gaggacttgaagtagtcgagtttggtgaaccaa 4951761  T
Q  151 aataaatctcttgtgttattcttcttccctctctctttttattt 194  Q
     |||| |||| |||||||||||| |   ||||||||||||||||    
T  4951762 gataactctcatgtgttattcttat---ctctctctttttattt 4951802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 38529310 - 38529200
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||| ||    
T  38529310 tggtgtgatcaagatcttatagtgctagtcagaaatttctgttagcaagacaactatagtggataatctcacacgaggtgt-gggcactggaagtagccg 38529212  T
Q  136 agtttgatgaac 147  Q
     ||||| |||||    
T  38529211 ggtttggtgaac 38529200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 5385745 - 5385874
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| ||||||| ||| ||||| | || |||||||||| | |||   |||||||||||||||||||||||||| |||| ||||||||||||||| ||     
T  5385745 tggtgtgatcaagaccttatagtgttggttagaagtttctatcagctgtatactatagtggataatctcacacgaagtgt-ggggactggaagtagccgg 5385843  T
Q  137 gtttgatgaaccagaataaatctcttgtgtt 167  Q
    ||||| |||||||| |||| |||| ||||||    
T  5385844 gtttggtgaaccaggataactctcctgtgtt 5385874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 19388813 - 19388948
Alignment:
Q  33 gatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgtta--gcaagatactatagtggataatctcacacgaggtgtgggggactggaagt 130  Q
    |||||||||| ||||| ||||| |||||||| |||||||||| || ||  ||   |||||||||| ||||||||||||||| |||| ||||||| |||||    
T  19388813 gatatggtgtcatcaacaacttatagtgctattcagaagtttatgatatagctgaatactatagtcgataatctcacacgaagtgt-ggggacttgaagt 19388911  T
Q  131 agtcgagtttgatgaaccagaataaatctcttgtgtt 167  Q
    || ||| |||| |||||||| ||||| ||||||||||    
T  19388912 agccgattttggtgaaccaggataaaactcttgtgtt 19388948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 4361618 - 4361491
Alignment:
Q  67 agaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgt 166  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||| || ||| | || ||  ||  ||| ||||||||| |||||||||||||||    
T  4361618 agaagtttttgttagcaggatactataatggataatctcacacgaggtgt-ggagaccgaaaataaccggatttaatgaaccaggataaatctcttgtgt 4361520  T
Q  167 tattcttcttccctctctctttttattta 195  Q
     ||||||  ||||| |||||| |||||||    
T  4361519 cattctttgtccctttctcttattattta 4361491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 17530029 - 17529910
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  17530029 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggata 17529930  T
Q  101 atctcacacgaggtgtgggg 120  Q
    ||||||||||  ||||||||    
T  17529929 atctcacacgtagtgtgggg 17529910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 23487370 - 23487417
Alignment:
Q  255 atattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23487370 atattctggtcctaattaatcacaaccaaattaatccagagttctctg 23487417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 54624727 - 54624791
Alignment:
Q  56 tagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggg 120  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||    
T  54624727 tagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtgggg 54624791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 32877923 - 32878006
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggg 120  Q
    |||||| ||||| || || ||||| || |||||||||| || ||||| ||||||||||||||||||||||||||  ||||||||    
T  32877923 tggtgtgatcaacaaattatagtgttattcagaagtttatgatagcatgatactatagtggataatctcacacgtagtgtgggg 32878006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 46305656 - 46305572
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||| |||||||||||||| |||| |||||||| ||||||||||| || |||||||||||||  |||| |||| |||||||||||    
T  46305656 atactaaagtggataatctca-acgaagtgtgggg-actggaagtagccgggtttgatgaaccaagataactctcctgtgttattct 46305572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 46305363 - 46305313
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||| ||||    
T  46305363 attctggtcctaattaatctcaatcatattaatccagagttctctggtcct 46305313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 23487145 - 23487236
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggac--tggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    ||||||||||||||||||||||||||  ||| ||||||  ||||||||  || | ||| |||||||| |||| |||| |||||||||||||||    
T  23487145 atactatagtggataatctcacacgaaatgt-ggggactgtggaagtaaccgggattggtgaaccaggataactctcctgtgttattcttctt 23487236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 4951850 - 4951898
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
    |||||||||||||||||||||||  | |||||||||| ||||| |||||    
T  4951850 aatattctggtcctaattaatcattatcaaattaatcgagagtgctctg 4951898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 37059106 - 37059313
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggat 99  Q
    |||||||||||||||||| |||  || |||  ||| |||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  37059106 gctgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatcttgtagtgctagtcagaagtttctgttagcaagaaaactatagtggat 37059204  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-----tccctctctctttttattt 194  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |||||||| |||| |||| ||||||||||||||     || |||||||| | |||||    
T  37059205 aatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctctctctctctctctctctctattt 37059303  T
Q  195 aaagttacac 204  Q
    ||||||||||    
T  37059304 aaagttacac 37059313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 3242420 - 3242282
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  3242420 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 3242322  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  3242321 ggtttggtgaaccaggataactctcctgtgttattcttct 3242282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 54690046 - 54689911
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  54690046 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 54689948  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattct 172  Q
     ||||| |||||||| |||| |||| |||||||||||    
T  54689947 ggtttggtgaaccaggataactctcctgtgttattct 54689911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 54699477 - 54699342
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  54699477 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 54699379  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattct 172  Q
     ||||| |||||||| |||| |||| |||||||||||    
T  54699378 ggtttggtgaaccaggataactctcctgtgttattct 54699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 26812563 - 26812701
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  26812563 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 26812661  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  26812662 ggtttggtgaaccaggataactctcctgtgttattcttct 26812701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 26822030 - 26822168
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  26822030 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 26822128  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  26822129 ggtttggtgaaccaggataactctcctgtgttattcttct 26822168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 3918121 - 3918294
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  3918121 tggtgtgatcaagaaattgtaatgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 3918219  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattct-tct-----tccctctctctttttatttaaagttacac 204  Q
     ||||| |||||||| |||| |||| ||||||||||| |||     || |||||||| |||||||||||||||||    
T  3918220 ggtttggtgaaccaggataactctcctgtgttattctctctctctctctctctctctctttatttaaagttacac 3918294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 15843024 - 15842897
Alignment:
Q  44 atcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttga 142  Q
    ||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||     
T  15843024 atcaagatcttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacgaggtgt-ggggactggaagtagccgagtttgg 15842926  T
Q  143 tgaaccagaataaatctcttgtgttattc 171  Q
    |||||||  |||| |||| ||||||||||    
T  15842925 tgaaccaagataactctcctgtgttattc 15842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 50516581 - 50516492
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||  ||||||| |||| |||| |||||||||||||||    
T  50516581 atactatagtggataatctcacacgaagtgtgggg-actggaagtagtcgggtttggggaaccaggataactctcctgtgttattcttctt 50516492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 11482548 - 11482645
Alignment:
Q  206 atatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctc 305  Q
    |||||||||| | ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11482548 atatacacaccctatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaattaatcacaaccaaattaatccagagttctctggtc 11482643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 18125514 - 18125387
Alignment:
Q  67 agaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgt 166  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||| || ||| | || ||  ||  ||| ||||||||| |||||||||||||||    
T  18125514 agaagtttttgttagcaggatactataatggataatctcacacgaggtgt-ggagaccgaaaataaccggatttaatgaaccaggataaatctcttgtgt 18125416  T
Q  167 tattcttcttccctctctctttttattta 195  Q
     ||||||  ||||| |||||| |||||||    
T  18125415 cattctttgtccctttctcttattattta 18125387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 20884532 - 20884447
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| || |||||  ||||||| |||| |||| |||||||||||    
T  20884532 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccgggtttggggaaccaggataactctcctgtgttattct 20884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 23622991 - 23623055
Alignment:
Q  56 tagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggg 120  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||    
T  23622991 tagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtgggg 23623055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 20884371 - 20884321
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  20884371 attctggtcctaattaatctcaaccatattaatccagagttctctggtcct 20884321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 11482419 - 11482508
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||||| || |||||   |||||| |||| |||| |  ||||||||||||    
T  11482419 atactatagtggataatctcacacgaagtgt-ggggactagaagtagccgggtttggacaaccaggataactctcctacgttattcttctt 11482508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 50516407 - 50516361
Alignment:
Q  255 atattctggtcctaattaatcacaaccaaattaatccagagttctct 301  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||||    
T  50516407 atatcctggacctaattaatcacaagcaaattaatccagagttctct 50516361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 7593061 - 7593227
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||| |     
T  7593061 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactataatggataatctcacacgaggtgt-ggggactggaagtagcca 7593159  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttcttccctctctctttttatttaaagttacac 204  Q
     ||||| |||||||| |||| |||||||||||||||||| || |||||||| |||||||||||||||||    
T  7593160 ggtttggtgaaccaggataactctcttgtgttattcttc-tctctctctctctttatttaaagttacac 7593227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 15174560 - 15174733
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggat 99  Q
    |||||||||||||||||| |||  || |||  ||| |||||| ||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  15174560 gctgaggttgataataca-ggtgtaacggactgatctggtgtgatcaagatcttgtagtgctagtcagaagtttttgttagcaagaaaactatagtggat 15174658  T
Q  100 aatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    ||||||||||||||||| ||||||||||||||| || ||||| |||||||| ||||||||| ||||||||||||||    
T  15174659 aatctcacacgaggtgt-ggggactggaagtagccgggtttggtgaaccaggataaatctcctgtgttattcttct 15174733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 48710131 - 48710004
Alignment:
Q  46 caagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatga 145  Q
    ||||| ||| |||||||||| ||||||||||  ||||   |||||||||||||||||||||||||| |||||||||||||||||||  |||||||| |||    
T  48710131 caagaccttatagtgctagttagaagtttctactagctgaatactatagtggataatctcacacgaagtgtgggggactggaagtatccgagtttggtga 48710032  T
Q  146 accagaataaatctcttgtgttattctt 173  Q
    |||||||||  |||| ||||||||||||    
T  48710031 accagaatatctctcctgtgttattctt 48710004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 32818100 - 32818318
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-------tcc 178  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||| || ||||| |||||||| |||| |||| ||||||||||||||       |||    
T  32818100 atactatagtggataatctcacacgaagtgt-ggggaccggaagtagccgggtttggtgaaccaggataactctcctgtgttattcttctttctctgtcc 32818198  T
Q  179 ctctctctttttatttaaagttacactatatacacac-acaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcac 277  Q
    |||||||| | | ||||   |||||| |||| ||||| || ||||||  || | |||||| |||| |||||  || ||||||||||||||||||||||||    
T  32818199 ctctctctatct-tttatttttacacgatatgcacacaactatcaca--cacattaatatctatttatctc--cagaatattctggtcctaattaatcac 32818293  T
Q  278 aaccaaattaatccagagttctctg 302  Q
    ||||||||||||| |||||||||||    
T  32818294 aaccaaattaatcaagagttctctg 32818318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 19352755 - 19352589
Alignment:
Q  3 tgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataat 102  Q
    ||||||| |||||||| |||  || |||  ||| |||||| |||| ||| || |||| | ||||||||||||||||||||| || |||||||||||||||    
T  19352755 tgaggttcataatacagggtgtaacggaaagatctggtgtgatcaggaatttatagtacaagtcagaagtttctgttagcaggagactatagtggataat 19352656  T
Q  103 ctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    ||||||||| |||| | ||||||||||||| ||| |||| |||||||| |||| |||| ||| |||||    
T  19352655 ctcacacgaagtgt-gaggactggaagtagccgaatttggtgaaccagtataactctcctgtattatt 19352589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 48709821 - 48709726
Alignment:
Q  210 acacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||||||| |||||| ||||| |||||||||||||||||  || |||||| |||||||||||||||| || |||||||||||||||||||||| ||||    
T  48709821 acacacactatcacactcatattaatatttattaatctc--cataatattttggtcctaattaatcaaaatcaaattaatccagagttctctgatcct 48709726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 14634910 - 14634776
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggggactggaagtagtcga 136  Q
    |||||| ||||||| ||| ||||| | || ||||||||||   |||   |||||||||||||||||||||||||| |||||||| ||||||||||| ||     
T  14634910 tggtgtgatcaagaccttatagtgttggttagaagtttctaccagctgcatactatagtggataatctcacacgaagtgtgggg-actggaagtagccgg 14634812  T
Q  137 gtttgatgaaccagaataaatctcttgtgttattct 172  Q
    ||||| |||||||| |||| |||| |||||||||||    
T  14634811 gtttggtgaaccaggataactctcctgtgttattct 14634776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 14644561 - 14644476
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  14644561 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 14644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 33292260 - 33292175
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  33292260 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 33292175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 9737050 - 9737139
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt 176  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||  |||||||| |||| |||| |||||||||||||||    
T  9737050 atactataatggataatctcacacgaagtgtgggg-actggaagtagccgggtttagtgaaccaggataactctcctgtgttattcttctt 9737139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 15947456 - 15947371
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattct 172  Q
    |||||||||||||||||||||||||| |||| || |||||||||||| || ||||| |||||||| |||| |||| |||||||||||    
T  15947456 atactatagtggataatctcacacgaagtgt-ggtgactggaagtagccgggtttggtgaaccaggataactctcctgtgttattct 15947371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 48709919 - 48709852
Alignment:
Q  232 taatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctct 301  Q
    ||||||||||| ||||||  | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48709919 taatatttatttatctct--agaatattctggtcctaattaatcacaaccatattaatccagagttctct 48709852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 28344280 - 28344379
Alignment:
Q  199 ttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttc 298  Q
    |||||| |||| ||||||| ||||||  |||  ||||||||||| |||||  || |||||| || || ||||||||||||||||||||||||||||||||    
T  28344280 ttacacgatatgcacacactatcacacacat--taatatttatttatctc--cagaatattttgatcttaattaatcacaaccaaattaatccagagttc 28344375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 302
Target Start/End: Complemental strand, 5293217 - 5293070
Alignment:
Q  154 aaatctcttgtgttattctt-cttccctctctctttttatttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttca 252  Q
    |||||||||||||||||||| ||||||| |||||| |||||||  || ||||| ||  ||||||  ||||| || ||| || |  |||||||||| || |    
T  5293217 aaatctcttgtgttattctttcttccctttctcttattatttag-gtcacacttta--cacacattatcacgattataatagttgttattaatctattaa 5293121  T
Q  253 c-aatattctggtcctaattaatcacaaccaaattaatccagagttctctg 302  Q
      |||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  5293120 agaatattttggtcctaattaaacacaatcaaattaatccagagttctctg 5293070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 11634413 - 11634340
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctc 160  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| ||||    
T  11634413 atactatagtggataatctcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctc 11634340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 13874492 - 13874572
Alignment:
Q  88 actatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||  || | |||||||| |||| |||| |||||||||    
T  13874492 actatagtggataatctcacacgaagtgt-ggggactggaagtag-cggattgggtgaaccaggataactctcctgtgttatt 13874572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 15947268 - 15947218
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||| ||||    
T  15947268 attctggtcctaaataatctcaaccatattaatccagagttctctggtcct 15947218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 9737212 - 9737262
Alignment:
Q  257 attctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    ||||||||||||||||||| |||||| ||||||| ||| ||||||| ||||    
T  9737212 attctggtcctaattaatctcaaccatattaatctagaattctctggtcct 9737262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 408383 - 408521
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  408383 tggtgtgatcaagatattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagacg 408481  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
     ||||| |||||||| |||| |||| ||||||||||||||    
T  408482 ggtttggtgaaccaggataactctcctgtgttattcttct 408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 94564 - 94429
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  94564 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaagtagccg 94466  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattct 172  Q
     ||||  |||||||| |||| |||| |||||||||||    
T  94465 ggtttagtgaaccaggataactctcctgtgttattct 94429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 104005 - 103870
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaag-atactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||| ||    
T  104005 tggtgtgatcaagaaattgtagtgctagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgt-ggggactggaattagccg 103907  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattct 172  Q
     ||||| |||||||| |||| |||| |||||||||||    
T  103906 ggtttggtgaaccaggataactctcctgtgttattct 103870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 2213 - 2435
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct-----tccct 180  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||| |||||||||||||||||||     |||||    
T  2213 atactatagtggataatctcacacgaagtgtgggg-actggaagtagccgggtttggtgaaccaggataactctcttgtgttattcttctttctctccct 2311  T
Q  181 ctctct-ttttatttaaagttacactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaa 279  Q
    |||||| | |  ||||   |||||| |||| |||||||  |||||| |||  ||||||||||| |||||  || ||| ||||| ||||||||||||||||    
T  2312 ctctctctatcttttatttttacacgatattcacacactgtcacaagcat--taatatttatttatctc--cagaatgttctgttcctaattaatcacaa 2407  T
Q  280 ccaaattaatccagagttctctgctcct 307  Q
     |||||||||||||||||||||| ||||    
T  2408 acaaattaatccagagttctctggtcct 2435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 30940 - 30818
Alignment:
Q  53 ttgtagtgctagtcagaagtttctgttagcaagata-ctatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccaga 151  Q
    |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||     
T  30940 ttgtagtgttagtcagaagtttctgttagcaagaaaactatagtggataatctcacacgaggtgtgggg-actggaagtagccgggtttggtgaaccagg 30842  T
Q  152 ataaatctcttgtgttattcttct 175  Q
    |||| |||| ||||||||||||||    
T  30841 ataactctcctgtgttattcttct 30818  T

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Target: scaffold0040; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 10097 - 10230
Alignment:
Q  37 tggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaaga-tactatagtggataatctcacacgaggtgtgggggactggaagtagtcg 135  Q
    |||||| ||| ||| ||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||||||||| ||| ||    
T  10097 tggtgtgatctagaccttatagtgctagtcagaagtttctgttagcaagacaactatagtggataatctcacacggggtgt-ggggactggaa-tagccg 10194  T
Q  136 agtttgatgaaccagaataaatctcttgtgttattc 171  Q
     ||||| |||||||  |||| |||| ||||||||||    
T  10195 tgtttggtgaaccaagataactctcatgtgttattc 10230  T

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Target: scaffold0040; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 26660 - 26777
Alignment:
Q  190 tatttaaagttacactatatacacacaca--atcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaatta 287  Q
    ||||||||||||||| ||| |||||||||  ||| ||   ||| |||||||||||||||||  || |||||||| ||  ||||||||||| | |||||||    
T  26660 tatttaaagttacacaatacacacacacactatctcaccaatattaatatttattaatctc--cagaatattctagtattaattaatcactatcaaatta 26757  T
Q  288 atccagagttctctgctcct 307  Q
    ||||||||||||||| ||||    
T  26758 atccagagttctctggtcct 26777  T

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Target: scaffold0040; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 23527 - 23600
Alignment:
Q  232 taatatttattaatctcttcacaatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||||||||||||||||  || |||||||| || |||||||||||| | |||||||||||||||||||||| ||||    
T  23527 taatatttattaatctc--cagaatattctagtactaattaatcactatcaaattaatccagagttctctggtcct 23600  T

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Target: scaffold0021 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 124151 - 124373
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttctt-----ccct 180  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||   |  ||||||||||||| |||| |||| |||||||||||||||     ||||    
T  124151 atactatagtggataatctcacacgaagtgtgggg-actggaagtaacaggatttgatgaaccaggataactctcctgtgttattcttctttctctccct 124249  T
Q  181 ctctctttttatttaaagtt-acactatatacacacacaatcacaatcatactaatatttattaatctcttcacaatattctggtcctaattaatcacaa 279  Q
    |||||| | | ||| |  || |||| |||| ||||||| ||||||| |||  ||||||||||| |||||  || ||| ||||||||||||||||||||||    
T  124250 ctctctctatcttttatttttacacgatattcacacactatcacaagcat--taatatttatttatctc--cagaatgttctggtcctaattaatcacaa 124345  T
Q  280 ccaaattaatccagagttctctgctcct 307  Q
    |||||||||| |||||||||||| ||||    
T  124346 ccaaattaatacagagttctctggtcct 124373  T

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Target: scaffold0021; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 100055 - 100119
Alignment:
Q  56 tagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggg 120  Q
    |||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||  ||||||||    
T  100055 tagtgctattcagaagtttctgatagcaggatactataatggataatctcacacgtagtgtgggg 100119  T

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Target: scaffold0247 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 24610 - 24729
Alignment:
Q  1 gctgaggttgataatacaaggtaaaatggatcgatatggtgtaatcaagaacttgtagtgctagtcagaagtttctgttagcaagatactatagtggata 100  Q
    ||||||||||||||||||  ||  || |||  ||| |||||| ||||| |  || |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  24610 gctgaggttgataatacagagtgtaacggactgatctggtgtgatcaacatattatagtgctattcagaagtttctgatagcaggatactatagtggata 24709  T
Q  101 atctcacacgaggtgtgggg 120  Q
    ||||||||||  ||||||||    
T  24710 atctcacacgtagtgtgggg 24729  T

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Target: scaffold0269 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 14927 - 14863
Alignment:
Q  56 tagtgctagtcagaagtttctgttagcaagatactatagtggataatctcacacgaggtgtgggg 120  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||    
T  14927 tagtgctattcagaagtttctgatagcaggatactatagtggataatctcacacgtagtgtgggg 14863  T

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Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 2344 - 2256
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttattcttct 175  Q
    ||||||||||||||||||||||| || |||| ||||||| ||||||| ||  || | |||||||| |||| |||| ||||||||||||||    
T  2344 atactatagtggataatctcacaagaagtgt-ggggactagaagtagccggattgggtgaaccaggataactctcctgtgttattcttct 2256  T

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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 257062 - 257142
Alignment:
Q  86 atactatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgtt 167  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||||| ||  |||| |||||||| |||| |||| ||||||    
T  257062 atactatagtggataatttcacacgaagtgt-ggggactggaagtagccggatttggtgaaccaggataactctcctgtgtt 257142  T

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Target: scaffold0010; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 257251 - 257304
Alignment:
Q  254 aatattctggtcctaattaatcacaaccaaattaatccagagttctctgctcct 307  Q
    |||| |||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  257251 aataatctggtccaaattaatcataaccatattaatccagagttctctggtcct 257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 12629 - 12548
Alignment:
Q  88 actatagtggataatctcacacgaggtgtgggggactggaagtagtcgagtttgatgaaccagaataaatctcttgtgttatt 170  Q
    |||||||||||||||||||||||| ||||  |||||||||||||| ||  || | |||||||| |||| |||| | |||||||    
T  12629 actatagtggataatctcacacgaagtgt-agggactggaagtagccggattgggtgaaccaggataactctcctatgttatt 12548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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