View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9514_3 (Length: 700)

Name: NF9514_3
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9514_3
NF9514_3
[»] chr7 (7 HSPs)
chr7 (262-525)||(26894572-26894840)
chr7 (598-669)||(26894433-26894504)
chr7 (128-184)||(26894921-26894977)
chr7 (394-452)||(25436747-25436805)
chr7 (263-324)||(44533582-44533643)
chr7 (405-470)||(44533746-44533811)
chr7 (410-447)||(33430972-33431009)
[»] chr5 (3 HSPs)
chr5 (392-448)||(3347159-3347214)
chr5 (405-449)||(3168329-3168373)
chr5 (428-468)||(25876203-25876243)
[»] chr3 (4 HSPs)
chr3 (394-453)||(35220586-35220645)
chr3 (394-471)||(25199402-25199479)
chr3 (390-452)||(6954231-6954293)
chr3 (393-469)||(18168991-18169067)
[»] chr2 (1 HSPs)
chr2 (394-469)||(25086582-25086657)
[»] chr8 (1 HSPs)
chr8 (394-452)||(11757884-11757941)
[»] chr6 (3 HSPs)
chr6 (393-467)||(11362017-11362091)
chr6 (369-431)||(34493788-34493850)
chr6 (341-402)||(8373506-8373567)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 262 - 525
Target Start/End: Complemental strand, 26894840 - 26894572
Alignment:
Q  262 gatcaatttgcataagaatttacaatattcgaatctatggatttgtttcgatatgagctcttaacatctttttattcatattttcatacgaatttaaaat 361  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26894840 gatcaatttgcataagaatttacaatattcgaatatatggatttgtttcgatatgagctcttaacatctttttattcatattttcatacgaatttaaaat 26894741  T
Q  362 ctgatggttgaaaaatcatatgtaaacagatcaaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggacggcgagtgt 461  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26894740 atgatggttgaaaaatcatatgtaaacagatcaaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggaccgcgagtgt 26894641  T
Q  462 aattttgcttataatatactatctagttactttgt-----caaaaaagtaaagaaatatatgcaactaa 525  Q
    ||||||||||||||||||||||| |||||||||||      ||||||||||||||||||||||||||||    
T  26894640 aattttgcttataatatactatccagttactttgtaaaaaaaaaaaagtaaagaaatatatgcaactaa 26894572  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 598 - 669
Target Start/End: Complemental strand, 26894504 - 26894433
Alignment:
Q  598 taaacatctaaatcattgataattttttatacataattgttgataatataattcaatggtttgcattcaata 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26894504 taaacatctaaatcattgataattttttatacataattgttgataatataattcaatggtttgcattcaata 26894433  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 26894977 - 26894921
Alignment:
Q  128 tctcacaaatatagcatattaacatataaaattaaaaatttacacttgtgaaccctt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26894977 tctcacaaatatagcatattaacatataaaattaaaaatttacacttgtgatccctt 26894921  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 25436805 - 25436747
Alignment:
Q  394 aaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggac 452  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||| ||| ||||||||    
T  25436805 aaaatgacatgaaaagaagataaaagacgaaatcgttatctgaaattaagctaagggac 25436747  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 44533582 - 44533643
Alignment:
Q  263 atcaatttgcataagaatttacaatattcgaatctatggatttgtttcgatatgagctctta 324  Q
    ||||||||||||| | |||| ||| |||| ||||||||| ||| ||||||||||||||||||    
T  44533582 atcaatttgcatatggattttcaagattcaaatctatggttttatttcgatatgagctctta 44533643  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 44533746 - 44533811
Alignment:
Q  405 aaaagaagataaataacgaaattgttatatgaaatcaagttaagggacggcgagtgtaattttgct 470  Q
    |||| ||||||||  || |||| ||||| |||||| ||||||||||||| ||||||||||||||||    
T  44533746 aaaaaaagataaaggacaaaatggttatctgaaattaagttaagggacgacgagtgtaattttgct 44533811  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 33431009 - 33430972
Alignment:
Q  410 aagataaataacgaaattgttatatgaaatcaagttaa 447  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  33431009 aagataaagaacgaaattgttatatgaaattaagttaa 33430972  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 3347214 - 3347159
Alignment:
Q  392 tcaaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaag 448  Q
    ||||||||||||||||| |||||||||||| |||||||||  |||||||||||||||    
T  3347214 tcaaaatgacatgaaaa-aagataaataactaaattgttacgtgaaatcaagttaag 3347159  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 3168329 - 3168373
Alignment:
Q  405 aaaagaagataaataacgaaattgttatatgaaatcaagttaagg 449  Q
    ||||||||||||||||| |||||||||  |||||| |||||||||    
T  3168329 aaaagaagataaataaccaaattgttacctgaaattaagttaagg 3168373  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 25876243 - 25876203
Alignment:
Q  428 gttatatgaaatcaagttaagggacggcgagtgtaattttg 468  Q
    ||||| |||||| ||||||||||||| ||||||||||||||    
T  25876243 gttatctgaaattaagttaagggacgacgagtgtaattttg 25876203  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 453
Target Start/End: Complemental strand, 35220645 - 35220586
Alignment:
Q  394 aaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggacg 453  Q
    |||||||  |||||| ||||||||| ||||||||||||| |||||| |||||||||||||    
T  35220645 aaaatgatgtgaaaaaaagataaatgacgaaattgttatctgaaattaagttaagggacg 35220586  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 25199402 - 25199479
Alignment:
Q  394 aaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggacggcgagtgtaattttgctt 471  Q
    |||||||| |||||| ||||||||  ||||||||||||| ||||||| |||||| ||||| | | |||| ||||||||    
T  25199402 aaaatgacgtgaaaaaaagataaaggacgaaattgttatctgaaatcgagttaaaggacgacaaatgtagttttgctt 25199479  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 6954231 - 6954293
Alignment:
Q  390 gatcaaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggac 452  Q
    ||||||| ||| ||||||| ||||||||| || |||||||||| | |||| ||||||||||||    
T  6954231 gatcaaattgaaatgaaaaaaagataaatgaccaaattgttatctaaaattaagttaagggac 6954293  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 18168991 - 18169067
Alignment:
Q  393 caaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggacggcgagtgtaattttgc 469  Q
    |||| ||| ||||||| ||||||||| || ||| |||||| |||||| ||||||||||||    |||||||||||||    
T  18168991 caaattgaaatgaaaaaaagataaatgaccaaactgttatctgaaattaagttaagggactaaaagtgtaattttgc 18169067  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 469
Target Start/End: Complemental strand, 25086657 - 25086582
Alignment:
Q  394 aaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggacggcgagtgtaattttgc 469  Q
    ||||||||||||||| || |||||| | ||||||||||| |||||| ||||| | |||||  ||||||||||||||    
T  25086657 aaaatgacatgaaaaaaatataaatgatgaaattgttatttgaaattaagttgaaggacgatgagtgtaattttgc 25086582  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 11757884 - 11757941
Alignment:
Q  394 aaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggac 452  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||| ||||||| ||||    
T  11757884 aaaatgacatgaaaa-aagataaataacgaaatttctatatgaaattaagttaaaggac 11757941  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 467
Target Start/End: Original strand, 11362017 - 11362091
Alignment:
Q  393 caaaatgacatgaaaagaagataaataacgaaattgttatatgaaatcaagttaagggacggcgagtgtaatttt 467  Q
    |||| ||| ||||||| ||||||||  || |||||||||| |||||| |||||||||||||   |||||||||||    
T  11362017 caaattgaaatgaaaaaaagataaaggaccaaattgttatctgaaattaagttaagggacgaaaagtgtaatttt 11362091  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 34493788 - 34493850
Alignment:
Q  369 ttgaaaaatcatatgtaaacagatcaaaatgacatgaaaagaagataaataacgaaattgtta 431  Q
    ||||||| ||||||| ||||| | ||||| ||| ||||||||||||||||||| |||| ||||    
T  34493788 ttgaaaattcatatgcaaacaaaccaaaaagacttgaaaagaagataaataacaaaatcgtta 34493850  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 8373506 - 8373567
Alignment:
Q  341 attttcatacgaatttaaaatctgatggttgaaaaatcatatgtaaacagatcaaaatgaca 402  Q
    |||||||||||||||| |||||| ||  ||||||| |  |||||||| ||||||||||||||    
T  8373506 attttcatacgaattttaaatctaatacttgaaaatttctatgtaaatagatcaaaatgaca 8373567  T

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