View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9514_5 (Length: 471)
Name: NF9514_5
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9514_5 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 12 - 467
Target Start/End: Original strand, 32885801 - 32886256
Alignment:
| Q |
12 |
atgaatggccaatagcaaaaatctaatagtaggtgacctaacgaattttgatagactatgataccatattagaatttaagttagacctcaaacttacaca |
111 |
Q |
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| T |
32885801 |
atgaatggccaatagcaaaaatctaatagtaggtgatctaacgaattttgatagactatgataccatattagaatttaagtcaggcctcaaacttacaca |
32885900 |
T |
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| Q |
112 |
accgacttgtaagctggtgggtgtctttactacatataaaccatgttaagtgaaacatttttagaattgcacattcggacaaactaattatttggaaaca |
211 |
Q |
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| T |
32885901 |
accgacttgtaagttggtgggtgtctttactacatataaaccatgttaagtgaaacatttttagaattgcacattcggataaactaattatttggaaaca |
32886000 |
T |
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| Q |
212 |
tatttaaaatgacataaaattagtgatttttatgaatgtgtgcatctgagtgcgacaaaagttttttcttgagtttccattcttagatgtactaatggta |
311 |
Q |
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| T |
32886001 |
tatttaaaatgacataaaattagtgatttttatgaatgtgtgcatctgagtgcgacaaaagttttttcttgagtttccattcttagatgtactaatggta |
32886100 |
T |
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| Q |
312 |
tataacttgactgtggaacaacaatagcaattcctcaacagttagcccaaaatttaggccccttacaaggttcttaaagtaaggttttttgagcaagcaa |
411 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32886101 |
tacaacttgactgtggaacaacaatagcaattcctcaacagttggcccaaaatttaggccccttacaaggttcttaaagtaaggttttttgagcaagcaa |
32886200 |
T |
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| Q |
412 |
gacttccctaacaaggtccctaatttgtaccatggagattgctctttagacaccta |
467 |
Q |
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| T |
32886201 |
gacttccctaacaaggtccctaatttgtaccatggagattgctctttagacaccta |
32886256 |
T |
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