View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9514_6 (Length: 406)
Name: NF9514_6
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9514_6 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 65 - 385
Target Start/End: Original strand, 11468285 - 11468605
Alignment:
| Q |
65 |
agttgtgatcaaacatatagagtcaaaagaagatcaagttgaaatgatgcaagaggatggtagtgaataatctattgtcacttcatcaaattaaatggtc |
164 |
Q |
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| T |
11468285 |
agttatgatcaaacatacagagtcaaaagaaaattaagttgaaatgatgcaagaggatggtagcgaataatctattgtcacttaatcaaattaaatggtc |
11468384 |
T |
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| Q |
165 |
aacattgataaaagttttgaaatattgggtc-aaattatggtttgggaaagtaagaggactaatgctacatttatgtnnnnnnnnntatcaatacgtaag |
263 |
Q |
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| T |
11468385 |
aacattgatcaaagttttgaaatagtgggtcaaaattatggtttgggaaagtaagaggactagtgctacatttatgt-aaaaaaaatatcaatacataag |
11468483 |
T |
|
| Q |
264 |
cgagaaaaagatgacatcgttgtcctcaaacaaaaatttgagagtaaaaaagtacatcatgatatatctaacnnnnnnnttgaagattttccaaattcta |
363 |
Q |
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| T |
11468484 |
cgagaaaaagatgacatcgttgtcctcaaacaaaaatttgagagtaaaaaagtacatcatgatatatctaacaaaaaaattgaagatgtcccaaattcta |
11468583 |
T |
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| Q |
364 |
catgttagaattgaacatgcaa |
385 |
Q |
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| T |
11468584 |
cctattagaattgaacatgcaa |
11468605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 11465637 - 11465794
Alignment:
| Q |
8 |
tgagatgaaaactaagacaaattacttacggttttnnnnnnncggggtgttaaattaagttgtgatcaaacatatagagtcaaaagaagatcaagttgaa |
107 |
Q |
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| T |
11465637 |
tgagatgaaaactaagacaaatcacttagagtcttaaaaaaatggggttttaaattgagtcgtaatcgagcatagaaagtcaaaagaagatcaa-ttaaa |
11465735 |
T |
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| Q |
108 |
atgatgcaagaggatggtagtgaataatctattgtcacttcatcaaattaaatggtcaa |
166 |
Q |
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| T |
11465736 |
atgaggcaagaggatggcagtgaacaatttattgttatttcatcaaattaaattgtcaa |
11465794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 11468215 - 11468283
Alignment:
| Q |
12 |
atgaaaactaagacaaattacttacggttttnnnnnnncggggtgttaaattaagttgtgatcaaacat |
80 |
Q |
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| T |
11468215 |
atgaaaactaagacaaattacttacagtttttaaaaaacggggtgttaaattgagttgtgatcaaacat |
11468283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 33333835 - 33333927
Alignment:
| Q |
70 |
tgatcaaacatatagagtcaaaagaagatcaagttgaaatgatgcaagaggatggtagtgaataatctattgtcacttcatcaaattaaatggt |
163 |
Q |
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| T |
33333835 |
tgatcaaatatacatagttaaaagaagatcaa-ttgaaatgatacaagaggttggaagtaaacaatttattgtcatgtcatcaaattaaatggt |
33333927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 18402449 - 18402495
Alignment:
| Q |
55 |
tgttaaattaagttgtgatcaaacatatagagtcaaaagaagatcaa |
101 |
Q |
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| T |
18402449 |
tgttaaattaagtggtgatcaaatatatagaggaaaaagaagatcaa |
18402495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 31978163 - 31978232
Alignment:
| Q |
91 |
aagaagatcaagttgaaatgatgcaagaggatggtagtgaataatctattgtcacttcatcaaattaaatg |
161 |
Q |
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| T |
31978163 |
aagaagatcaa-ttgaaatgatgcaaatgaatgatagtgaacaatttattgtcacgtcatcaaattgaatg |
31978232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 10565594 - 10565670
Alignment:
| Q |
89 |
aaaagaagatcaagttgaaatgatgcaagaggatggtagtgaataatctattgtcacttcatcaaattaaatggtcaa |
166 |
Q |
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| T |
10565594 |
aaaagaagatcaa-ttgaaatgatacaagaggttgagagtgaacaatttattgccacatcatcaaattagatagtcaa |
10565670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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