View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9514_8 (Length: 342)

Name: NF9514_8
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9514_8
NF9514_8
[»] chr1 (4 HSPs)
chr1 (185-313)||(1761588-1761716)
chr1 (37-119)||(1761817-1761899)
chr1 (246-282)||(7946855-7946891)
chr1 (192-244)||(15059411-15059463)
[»] chr6 (2 HSPs)
chr6 (192-244)||(14504091-14504143)
chr6 (246-294)||(21982470-21982518)
[»] chr5 (5 HSPs)
chr5 (246-305)||(4603765-4603824)
chr5 (192-244)||(11464917-11464969)
chr5 (192-244)||(13038464-13038516)
chr5 (192-244)||(13108459-13108511)
chr5 (246-294)||(15641255-15641303)
[»] chr8 (5 HSPs)
chr8 (192-246)||(264409-264463)
chr8 (192-246)||(651458-651512)
chr8 (192-246)||(837193-837247)
chr8 (192-244)||(20306048-20306100)
chr8 (192-244)||(21092681-21092733)
[»] chr7 (2 HSPs)
chr7 (246-299)||(28089814-28089867)
chr7 (192-244)||(33137834-33137886)
[»] chr4 (3 HSPs)
chr4 (192-245)||(37172900-37172953)
chr4 (192-244)||(34723935-34723987)
chr4 (246-294)||(52983618-52983666)
[»] chr2 (1 HSPs)
chr2 (247-300)||(4567588-4567641)
[»] chr3 (1 HSPs)
chr3 (192-244)||(32151560-32151612)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 1761716 - 1761588
Alignment:
Q  185 aactcattatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttgtgaggagcaaacttcaatatctcaagccaacaactaggct 284  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||| ||||| ||||||||| ||||||| | ||||||||||||    
T  1761716 aactcattatccgatccaatgaccgactaattcgagagaatcaattccaccacccacctgtaaggagtaaacttcaagatctcaaacaaacaactaggct 1761617  T
Q  285 agccccaaatagattacgattagactata 313  Q
    ||||||||||||||||||| || ||||||    
T  1761616 agccccaaatagattacgactaaactata 1761588  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 1761899 - 1761817
Alignment:
Q  37 agtgcactctgttatgtaaaatttcaataaacatggaattactttttacctatttcnnnnnnnatattcttagtcaaactctt 119  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||       ||||||||||||||| ||||    
T  1761899 agtgcactctgttatgtaaaaattcaataaatatggaattactttttacctatttctttttttatattcttagtcaaattctt 1761817  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 7946891 - 7946855
Alignment:
Q  246 gaggagcaaacttcaatatctcaagccaacaactagg 282  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  7946891 gaggagcaaacttcaagatctcaagccaaccactagg 7946855  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 15059411 - 15059463
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||||||  ||||||||||||||| ||| |||| ||||| ||||||||    
T  15059411 tatccgatccaagaatcgactaattcgaggggaccaatctcaccgcccacttg 15059463  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 14504091 - 14504143
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    |||||||| ||| |||||||||||||||||||||||||  |||| ||||||||    
T  14504091 tatccgatacaaggatcgactaattcgagaggatcaatcccaccgcccacttg 14504143  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 21982470 - 21982518
Alignment:
Q  246 gaggagcaaacttcaatatctcaagccaacaactaggctagccccaaat 294  Q
    |||||||||||||||| ||| ||||||||| ||||||| | ||||||||    
T  21982470 gaggagcaaacttcaagatcccaagccaaccactaggccaaccccaaat 21982518  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 4603824 - 4603765
Alignment:
Q  246 gaggagcaaacttcaatatctcaagccaacaactaggctagccccaaatagattacgatt 305  Q
    |||||||||||| ||| ||| ||||||||| ||||||| | |||||||| ||||||||||    
T  4603824 gaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatggattacgatt 4603765  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 11464917 - 11464969
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||||||  ||||||||||||||| ||| ||||  |||||||||||||    
T  11464917 tatccgatccaagaatcgactaattcgaggggaccaatcccaccacccacttg 11464969  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 13038464 - 13038516
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||||||  ||||||||||||||| ||||||||  |||| ||||||||    
T  13038464 tatccgatccaagaatcgactaattcgaggggatcaatcccaccgcccacttg 13038516  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 13108459 - 13108511
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||||||  ||||||||||||||| ||||||||  |||| ||||||||    
T  13108459 tatccgatccaagaatcgactaattcgaggggatcaatcccaccgcccacttg 13108511  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 15641255 - 15641303
Alignment:
Q  246 gaggagcaaacttcaatatctcaagccaacaactaggctagccccaaat 294  Q
    |||||||||||| ||| ||| ||||||||| ||||||||| ||||||||    
T  15641255 gaggagcaaactccaagatcccaagccaaccactaggctaaccccaaat 15641303  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 264409 - 264463
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttgtg 246  Q
    ||||||||||||  ||||||||||||||| |||||||| ||||| |||| |||||    
T  264409 tatccgatccaagaatcgactaattcgaggggatcaatctcaccgcccatttgtg 264463  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 651512 - 651458
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttgtg 246  Q
    ||||||||||||  ||||||||||||||| |||||||| ||||| |||| |||||    
T  651512 tatccgatccaagaatcgactaattcgaggggatcaatctcaccgcccatttgtg 651458  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 837247 - 837193
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttgtg 246  Q
    ||||||||||||  ||||||||||||||| |||||||| ||||| |||| |||||    
T  837247 tatccgatccaagaatcgactaattcgaggggatcaatctcaccgcccatttgtg 837193  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 20306100 - 20306048
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    |||||||||||| |||||||||||||||| ||| ||||  |||| ||||||||    
T  20306100 tatccgatccaaggatcgactaattcgaggggaccaatcccaccgcccacttg 20306048  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 21092733 - 21092681
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    |||||||||||| |||||||||||||||| ||| ||||  |||| ||||||||    
T  21092733 tatccgatccaaggatcgactaattcgaggggaccaatcccaccgcccacttg 21092681  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 28089867 - 28089814
Alignment:
Q  246 gaggagcaaacttcaatatctcaagccaacaactaggctagccccaaatagatt 299  Q
    |||||||||||| ||| ||||||||||||| ||||||| | |||||||| ||||    
T  28089867 gaggagcaaactccaagatctcaagccaaccactaggccaaccccaaatggatt 28089814  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 33137834 - 33137886
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||| ||  ||||||||||||||| ||| |||||||||| ||||||||    
T  33137834 tatccgatctaagaatcgactaattcgaggggaccaatttcaccgcccacttg 33137886  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 37172953 - 37172900
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttgt 245  Q
    |||||||||||| ||||||||||| ||| ||||||||| ||||| | |||||||    
T  37172953 tatccgatccaaggatcgactaatccgaaaggatcaatctcaccgctcacttgt 37172900  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 34723987 - 34723935
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||||||  |||||||||| |||||||| ||||  |||||||||||||    
T  34723987 tatccgatccaagaatcgactaatccgagaggaccaatcccaccacccacttg 34723935  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 52983666 - 52983618
Alignment:
Q  246 gaggagcaaacttcaatatctcaagccaacaactaggctagccccaaat 294  Q
    |||||||||||| ||| ||||||||||||| ||||||| | ||||||||    
T  52983666 gaggagcaaactccaagatctcaagccaaccactaggccaaccccaaat 52983618  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 4567588 - 4567641
Alignment:
Q  247 aggagcaaacttcaatatctcaagccaacaactaggctagccccaaatagatta 300  Q
    ||||||||||||||| ||| ||||||||| ||||||| | |||||||| |||||    
T  4567588 aggagcaaacttcaagatcccaagccaactactaggccaaccccaaatggatta 4567641  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 32151612 - 32151560
Alignment:
Q  192 tatccgatccaatgatcgactaattcgagaggatcaatttcaccacccacttg 244  Q
    ||||||||||||  ||||||||||||||| ||| |||| ||||| ||||||||    
T  32151612 tatccgatccaagaatcgactaattcgaggggaccaatctcaccgcccacttg 32151560  T

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