View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9514_9 (Length: 335)

Name: NF9514_9
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9514_9
NF9514_9
[»] chr6 (1 HSPs)
chr6 (1-332)||(34493683-34494019)
[»] chr2 (3 HSPs)
chr2 (4-124)||(474659-474779)
chr2 (6-45)||(24596549-24596588)
chr2 (6-45)||(24617526-24617565)
[»] chr4 (2 HSPs)
chr4 (4-125)||(33815343-33815464)
chr4 (80-134)||(8358550-8358604)
[»] chr1 (5 HSPs)
chr1 (8-122)||(30027062-30027176)
chr1 (56-124)||(29570691-29570759)
chr1 (56-163)||(33459092-33459198)
chr1 (56-121)||(45682540-45682605)
chr1 (56-124)||(8461377-8461445)
[»] chr5 (1 HSPs)
chr5 (14-134)||(4914882-4915002)
[»] chr8 (2 HSPs)
chr8 (1-134)||(24566519-24566652)
chr8 (56-120)||(32478076-32478139)
[»] chr7 (2 HSPs)
chr7 (74-124)||(45533809-45533859)
chr7 (106-163)||(26894676-26894733)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 34493683 - 34494019
Alignment:
Q  1 tggattttcaagcttcaaatctatagttttatttccctgtgagttgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34493683 tggattttcaagcttcaaatctatagttttatttccctgtgagctgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgt 34493782  T
Q  101 gaagtttgaaaattcatatgcaaacaaaccaaaaagacttgaaaagaagataaataacaaaatcgtaaattcgtgtagtaattttacctaaaaagaaagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34493783 gaagtttgaaaattcatatgcaaacaaaccaaaaagacttgaaaagaagataaataacaaaatcgttaattcgtgtagtaattttacctaaaaagaaagc 34493882  T
Q  201 ttatgatgcatcggctgcaacaatgtgtccttaagtccaggaagatgagaagtgtgaatcaagagcccatgctc-------ggtagaagaaacaaaatta 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  34493883 ttatgatgcatcggctgcaacaatgtgtccttaagtccaggaagatgagaagtgtgaatcaagagcccatgctcggtagaaggtagaagaaacaaaatta 34493982  T
Q  294 gccgagaaaaatcagcactttgattgccttcacgaatag 332  Q
    ||| ||  |||||||||||||||||||||||||||||||    
T  34493983 gccaag--aaatcagcactttgattgccttcacgaatag 34494019  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 474659 - 474779
Alignment:
Q  4 attttcaagcttcaaatctatagttttatttccctgtgagttgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgtgaa 103  Q
    |||||||||||||||||| || ||||||||| |||||||||| || || || ||||||||||| ||||| ||||| |||||||||||||||  || ||||    
T  474659 attttcaagcttcaaatcgatggttttattttcctgtgagttctcagtcttcaaatctatggtccttcacccatgtttgcatatgaatcttaaatttgaa 474758  T
Q  104 gtttgaaaattcatatgcaaa 124  Q
    | |||||||||||||||||||    
T  474759 gcttgaaaattcatatgcaaa 474779  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 24596588 - 24596549
Alignment:
Q  6 tttcaagcttcaaatctatagttttatttccctgtgagtt 45  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  24596588 tttcaagcttcaaatctgtagttttctttccctgtgagtt 24596549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 24617526 - 24617565
Alignment:
Q  6 tttcaagcttcaaatctatagttttatttccctgtgagtt 45  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  24617526 tttcaagcttcaaatctgtagttttctttccctgtgagtt 24617565  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 33815464 - 33815343
Alignment:
Q  4 attttcaagcttcaaatctatagttttatttccctgtgagttgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgtgaa 103  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||| || |||| |||| ||||| ||||||| |||||||||||  |  ||| | ||    
T  33815464 attttcaaacttaaaatctatagttttatttccctgtgacttgtcggtcttcaaatttatgattctttatccatgtttgcatatgaacatgagattttaa 33815365  T
Q  104 gtttgaaaattcatatgcaaac 125  Q
      ||||||||||||||||||||    
T  33815364 acttgaaaattcatatgcaaac 33815343  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 8358550 - 8358604
Alignment:
Q  80 ttgcatatgaatctttgatgtgaagtttgaaaattcatatgcaaacaaaccaaaa 134  Q
    ||||||||||||||| ||| ||||| ||||||||||||||| ||| | |||||||    
T  8358550 ttgcatatgaatcttagatttgaagcttgaaaattcatatgtaaatagaccaaaa 8358604  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 30027176 - 30027062
Alignment:
Q  8 tcaagcttcaaatctatagttttatttccctgtgagttgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagttt 107  Q
    ||||||||||||||||| |||||||||| || |||| | || || || ||||||||||||||||| ||||| |||||||||||| || ||| ||||| ||    
T  30027176 tcaagcttcaaatctatggttttatttctctatgagctttcagtcttcaaatctatggttcttcagccatgtttgcatatgaattttagatttgaagctt 30027077  T
Q  108 gaaaattcatatgca 122  Q
    ||||||  |||||||    
T  30027076 gaaaatcgatatgca 30027062  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 29570691 - 29570759
Alignment:
Q  56 aaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatgcaaa 124  Q
    |||||||||||  |||| | ||| ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  29570691 aaatctatggtctttcacctatgtttgcatatgaatctttgatttgaagcttgaaaatacatatgcaaa 29570759  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 33459198 - 33459092
Alignment:
Q  56 aaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatgcaaacaaaccaaaaagacttgaaaagaagataaat 155  Q
    |||| |||||||||||||  ||| || ||||| ||| || ||| ||| |||||||||||||||| |||||  ||||||| ||| |||||| |||||||||    
T  33459198 aaatatatggttcttcattgatgttttcatataaattttagatttgatgtttgaaaattcatattcaaacggaccaaaaggacatgaaaa-aagataaat 33459100  T
Q  156 aacaaaat 163  Q
     |||||||    
T  33459099 gacaaaat 33459092  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 45682605 - 45682540
Alignment:
Q  56 aaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatgc 121  Q
    |||||||||||  |||||||||| |||||||||||||||  || | ||| ||||||||||||||||    
T  45682605 aaatctatggtctttcatccatgtttgcatatgaatcttatatttaaagcttgaaaattcatatgc 45682540  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 8461377 - 8461445
Alignment:
Q  56 aaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatgcaaa 124  Q
    |||| ||||||  |||||| |||||| | |||||||||| |||  ||| ||||||||||||||||||||    
T  8461377 aaatttatggtctttcatctatgattacctatgaatcttagattagaattttgaaaattcatatgcaaa 8461445  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 4914882 - 4915002
Alignment:
Q  14 ttcaaatctatagttttatttccctgtgagttgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaat 113  Q
    |||||||||||||||||||||   | |||| | |  |||||||||| |||| |  ||||| |||| || ||||||||| || ||| ||| ||||||||||    
T  4914882 ttcaaatctatagttttattttaatatgagctcttcgtatttaaatttatgatcattcattcatgttttcatatgaattttagatttgatgtttgaaaat 4914981  T
Q  114 tcatatgcaaacaaaccaaaa 134  Q
    | |||||||||||||||||||    
T  4914982 ttatatgcaaacaaaccaaaa 4915002  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24566519 - 24566652
Alignment:
Q  1 tggattttcaagcttcaaatctatagttttatttccctgtgagttgtcggtatttaaatctatggttcttcatccatgattgcatatgaatctttgatgt 100  Q
    |||||||| |||||| ||||||||  |||||||| |||||||| | || |  || |||| |||||| ||||| ||||| ||| |||||||| || ||| |    
T  24566519 tggatttttaagctttaaatctatgattttattttcctgtgagctctcagccttcaaatttatggtccttcagccatgtttgtatatgaatattagattt 24566618  T
Q  101 gaagtttgaaaattcatatgcaaacaaaccaaaa 134  Q
    |||  ||||| || |||||||||||  |||||||    
T  24566619 gaaacttgaacatccatatgcaaacggaccaaaa 24566652  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 32478139 - 32478076
Alignment:
Q  56 aaatctatggttcttcatccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatg 120  Q
    |||||||||||| |||| | ||| ||||||||||||||| ||  |||||||| ||||||||||||    
T  32478139 aaatctatggtttttca-ctatgtttgcatatgaatcttagaattgaagttttaaaattcatatg 32478076  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 45533809 - 45533859
Alignment:
Q  74 ccatgattgcatatgaatctttgatgtgaagtttgaaaattcatatgcaaa 124  Q
    ||||| |||||||||||||||  || |||| ||||||||||||||||||||    
T  45533809 ccatgtttgcatatgaatcttaaatttgaaatttgaaaattcatatgcaaa 45533859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 26894733 - 26894676
Alignment:
Q  106 ttgaaaattcatatgcaaacaaaccaaaaagacttgaaaagaagataaataacaaaat 163  Q
    ||||||| ||||||| ||||| | ||||| ||| ||||||||||||||||||| ||||    
T  26894733 ttgaaaaatcatatgtaaacagatcaaaatgacatgaaaagaagataaataacgaaat 26894676  T

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