View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9514_low_1 (Length: 347)
Name: NF9514_low_1
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9514_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 3751960 - 3752299
Alignment:
| Q |
1 |
atgtgattttatcaaattattagtgtgtcgacttgtcagtgttcgtatcgtatccggtatccatgtttgtgtccgtttccgtgcttcatagtttgaaggt |
100 |
Q |
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| T |
3751960 |
atgtgattttctcaaattattagtgtgtcgacttgttagtgttcgtgtcgtgtccggtatccatgtttgtgtccgtttccgtgcttcatagtttgaaggt |
3752059 |
T |
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| Q |
101 |
tatgaagaattgattattatgtaggtaaagagccatccacggttactctaaaataatattatatatttgatatccaatgagagtctttctatttaatcat |
200 |
Q |
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| T |
3752060 |
tatgaagaattgattattatgtaagtaaagagccatccacgattactctaaaataattttatatatttgatatccaatgagagtctttctatttattcat |
3752159 |
T |
|
| Q |
201 |
atcatctcactattttttaaaaccaattgacccaatgcttca--------attaaaaactacaaattgtagagtctaattgacatacgttttgacctatg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3752160 |
atcatctcactattttttaaaaccaattgacccaatgcttcaatacctctattaaaaactacaaattgtagagtctaattgacatacgttttgacctatg |
3752259 |
T |
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| Q |
293 |
tccgacgataaatatttggaccacacgagtcgacgtaatt |
332 |
Q |
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| T |
3752260 |
tccgacgataaatatttggaccatacgagtcgacgtaatt |
3752299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6247651 - 6247593
Alignment:
| Q |
1 |
atgtgattttatcaaattattag-tgtgtcgacttgtcagtgttcgtatcgtatccggt |
58 |
Q |
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| T |
6247651 |
atgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggt |
6247593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 15972897 - 15972811
Alignment:
| Q |
6 |
attttatcaaattattagt-gtgtcgacttgtcagtgttcgtatcgtatccggtatccatgtttgtgtccgtttccgtgcttcatag |
91 |
Q |
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| T |
15972897 |
attttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtctgtgtctgtgtccgtatccgtgcttcatag |
15972811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1262913 - 1262851
Alignment:
| Q |
1 |
atgtgattttatcaaattattag-tgtgtcgacttgtcagtgttcgtatcgtatccggtatcc |
62 |
Q |
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| T |
1262913 |
atgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccggtatcc |
1262851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38078691 - 38078737
Alignment:
| Q |
1 |
atgtgattttatcaaattattag-tgtgtcgacttgtcagtgttcgt |
46 |
Q |
| |
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| T |
38078691 |
atgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgt |
38078737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 29510335 - 29510400
Alignment:
| Q |
2 |
tgtgattttatcaaattattag-tgtgtcgacttgtcagtgttcgtatcgtatccggtatccatgt |
66 |
Q |
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| T |
29510335 |
tgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgt |
29510400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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