View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9514_low_2 (Length: 231)
Name: NF9514_low_2
Description: NF9514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9514_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36932424 - 36932584
Alignment:
| Q |
1 |
tcaaagaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtgaagggtttggccaaggccgagcccgtttggctcaa |
100 |
Q |
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| T |
36932424 |
tcaaagaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtcaagggtttggccaaggccgagcccgtttggctcaa |
36932523 |
T |
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| Q |
101 |
agccatggaacagttaatctcctgatctttcatgtttgaacttattttctcatacaatgtc |
161 |
Q |
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| T |
36932524 |
agccatggaacagttaatctcctgatctttcatgtttgaacttattttctcttacaatgtc |
36932584 |
T |
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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 990311 - 990422
Alignment:
| Q |
5 |
agaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtgaagggtttggccaaggccgagcccgtttggctcaaagcc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||| |
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| T |
990311 |
agaagtgggaacaatgtcgtttatgaaaggagatttgctttctcggtccagaaagctcgtcaagggtttggccatggccgaacctgtttggctcaaagcc |
990410 |
T |
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| Q |
105 |
atggaacagtta |
116 |
Q |
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| T |
990411 |
atggaacagtta |
990422 |
T |
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