View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9515_1 (Length: 736)

Name: NF9515_1
Description: NF9515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9515_1
NF9515_1
[»] chr7 (5 HSPs)
chr7 (28-603)||(10597224-10597779)
chr7 (675-733)||(10597851-10597908)
chr7 (443-558)||(4288556-4288671)
chr7 (236-293)||(5677996-5678053)
chr7 (236-293)||(5703048-5703105)
[»] chr5 (4 HSPs)
chr5 (102-252)||(18925678-18925824)
chr5 (446-546)||(113946-114046)
chr5 (153-285)||(30808584-30808712)
chr5 (484-546)||(23689244-23689306)
[»] chr1 (4 HSPs)
chr1 (434-546)||(18439574-18439686)
chr1 (434-546)||(18450432-18450544)
chr1 (446-578)||(18104143-18104275)
chr1 (163-200)||(34273085-34273122)
[»] chr8 (2 HSPs)
chr8 (474-572)||(24750424-24750523)
chr8 (446-504)||(23412987-23413045)
[»] chr4 (4 HSPs)
chr4 (446-595)||(10398625-10398774)
chr4 (446-503)||(8946408-8946465)
chr4 (211-364)||(11672890-11673043)
chr4 (156-197)||(42479540-42479581)
[»] scaffold0027 (1 HSPs)
scaffold0027 (434-503)||(8922-8991)
[»] chr2 (1 HSPs)
chr2 (478-512)||(31483284-31483318)
[»] chr6 (1 HSPs)
chr6 (249-310)||(2837194-2837255)
[»] chr3 (1 HSPs)
chr3 (159-200)||(9007832-9007873)


Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 28 - 603
Target Start/End: Original strand, 10597224 - 10597779
Alignment:
Q  28 aattagtttatgatatgtccggtgaagattagagaaatgtagtggtcattctctgggaactgtgaatgatgtctcggtggttcacggtgctccggtgtgg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597224 aattagtttatgatatgtccggtgaagattagagaaatgtagtggtcgttctctgggaactgtgaatgatgtctcggtggttcacggtgctccggtgtgg 10597323  T
Q  128 ttgagtgtaagcttcgtcaccggatgagaatggtgcctgcaagcacgttaactctccaatgctcaagtcagtacatgagaaagagaggtggattgtgtgc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10597324 ttgagtgtaagcttcgtcaccggatgagaatggtgcctgcaagcacgttaacactccaatgctcaagtcagtacatgagaaagagaggtggattgtgtgc 10597423  T
Q  228 gaaatttgggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgaggaggacgataattgtctccctattatgcggcgtgaatc 327  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10597424 gaaatttgggtgaatgaaagtgtaccttgagcgtgacgctgagtcacgcttatatagctgaggaggacgataattgtctccctattatgcggcatgaatc 10597523  T
Q  328 ttggaagcagttagagatgaatctgacggctaggatttgattatggcgcactcttgtgcggtaaggcgcacaaggttgagcaatgctcttttctaaatag 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597524 ttggaagcagttagagatgaatctgacggctaggatttgattatggcgcgctcttgtgcggtaaggcgcacaaggttgagcaatgctcttttctaaatag 10597623  T
Q  428 tatggatgtttactgttatttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatccaatgacatatttgtgcaatggtt 527  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||                     ||||||||||||||||||||||    
T  10597624 tatggatgtttactgttgtttttggtaaacaagtgttagttttagttttattgcttg--------------------tatgacatatttgtgcaatggtt 10597703  T
Q  528 tctcagaaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcatctgac 603  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10597704 tctcataaaagtttgaatgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtctcatttgac 10597779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 675 - 733
Target Start/End: Original strand, 10597851 - 10597908
Alignment:
Q  675 tattttgattgaataaatgtaaacttgtatcaaatcacacatacatttcttctcactcg 733  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  10597851 tattttgattgaataaatgtaa-cttgtatcaaatcacacatacatttcttgtcactcg 10597908  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 558
Target Start/End: Complemental strand, 4288671 - 4288556
Alignment:
Q  443 ttatttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactag-aaatccaatgacatatttgtgcaatggtttctcagaaaagttt 541  Q
    ||||||||||||||||| | | |||||||  |||||| ||  || ||| ||||||| |||||| ||||||||||||||||||  |||||||||||  |||    
T  4288671 ttatttttggtaaacaatcattagttttaaatttattactcacaggattaaactagtaaatcctatgacatatttgtgcaat-atttctcagaaatattt 4288573  T
Q  542 gaatgctcgtcttgttc 558  Q
     ||||||| || |||||    
T  4288572 aaatgctcatcatgttc 4288556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 5678053 - 5677996
Alignment:
Q  236 ggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgaggagg 293  Q
    ||||||||| | ||||||||||  ||||| |||||||||| ||||||||||| |||||    
T  5678053 ggtgaatgagattgtaccttgactgtgacgctgagtcacggttatatagctgcggagg 5677996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 5703105 - 5703048
Alignment:
Q  236 ggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgaggagg 293  Q
    ||||||||| | ||||||||||  ||||| |||||||||| ||||||||||| |||||    
T  5703105 ggtgaatgagattgtaccttgactgtgacgctgagtcacggttatatagctgcggagg 5703048  T

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Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 18925824 - 18925678
Alignment:
Q  102 cggtggttcacggtgctccggtgtggttgagtgtaagcttcgtcaccggatgagaatggtgcctgcaagcacgttaactctccaatgctcaagtcagtac 201  Q
    ||||||||||||||||||||||||||  ||| | ||| ||| |   |||| ||||||||||| |||| | |||||||| ||||||  ||||||||||||     
T  18925824 cggtggttcacggtgctccggtgtggaggagagcaagtttcataggcggaggagaatggtgcttgcatgaacgttaacactccaacactcaagtcagta- 18925726  T
Q  202 atgagaaagagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtac 252  Q
       || |||| ||||||||||||||||||| |||  |||||||||||||||    
T  18925725 ---agtaagaaaggtggattgtgtgcgaaaattgaatgaatgaaagtgtac 18925678  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 114046 - 113946
Alignment:
Q  446 tttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaat 545  Q
    |||||||||||||| |   |||||||| || |||||||||||||||||| || |||||  | |||||||||||||||| |||||||| ||||||||||||    
T  114046 tttttggtaaacaatcactagttttagattaattgcttgcatgatcaaattaaaaatcataagacatatttgtgcaatagtttctcaaaaaagtttgaat 113947  T
Q  546 g 546  Q
    |    
T  113946 g 113946  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 30808712 - 30808584
Alignment:
Q  153 gagaatggtgcctgcaagcacgttaactctccaatgctcaagtcagtacatgagaaagagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtac 252  Q
    ||||||||||||||||  ||||||| | ||||||  |||||||| ||  ||| |||  |||||||||||||||| ||||  ||||||||| ||||||||     
T  30808712 gagaatggtgcctgcagacacgttagcactccaacactcaagtcggt--atgtgaa--agaggtggattgtgtgtgaaaactgggtgaataaaagtgtat 30808617  T
Q  253 cttgagcgtgacactgagtcacgcttatatagc 285  Q
    |||||||||||  |||||||| |||||||||||    
T  30808616 cttgagcgtgatgctgagtcatgcttatatagc 30808584  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 484 - 546
Target Start/End: Original strand, 23689244 - 23689306
Alignment:
Q  484 gcatgatcaaactagaaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaatg 546  Q
    ||||| ||||||| ||||||| |||| ||||||||||||| |||| |||||||||||||||||    
T  23689244 gcatgttcaaacttgaaatcctatgatatatttgtgcaatagtttatcagaaaagtttgaatg 23689306  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 434 - 546
Target Start/End: Complemental strand, 18439686 - 18439574
Alignment:
Q  434 tgtttactgttatttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatccaatgacatatttgtgcaatggtttctcag 533  Q
    ||||||||  || ||||||||||||| | | |||||||  || |||||||||| |||||||||||||||   | ||| ||||||||||||  |||||||     
T  18439686 tgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcaggatcaaactagaaattttaggacgtatttgtgcaattatttctcat 18439587  T
Q  534 aaaagtttgaatg 546  Q
    |||||||||||||    
T  18439586 aaaagtttgaatg 18439574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 434 - 546
Target Start/End: Complemental strand, 18450544 - 18450432
Alignment:
Q  434 tgtttactgttatttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatccaatgacatatttgtgcaatggtttctcag 533  Q
    ||||||||  || ||||||||||||| | | |||||||  || |||||||||| |||||||||||||||   | ||| ||||||||||||  |||||||     
T  18450544 tgtttacttgtacttttggtaaacaatcattagttttaaattaattgcttgcaggatcaaactagaaattttaggacgtatttgtgcaattatttctcat 18450445  T
Q  534 aaaagtttgaatg 546  Q
    |||||||||||||    
T  18450444 aaaagtttgaatg 18450432  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 578
Target Start/End: Complemental strand, 18104275 - 18104143
Alignment:
Q  446 tttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaacta-gaaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaa 544  Q
    |||||||||||||| |   |||||||  |||||| |||||||||||||||||  |||||  | |||||| ||||||||| ||||||||||||||||||||    
T  18104275 tttttggtaaacaatcactagttttaaatttattacttgcatgatcaaactattaaatcgtaggacataattgtgcaat-gtttctcagaaaagtttgaa 18104177  T
Q  545 tgctcgtcttgttcttaagtttgaatgtgaaaag 578  Q
    |  || || ||||| || | |||||||| |||||    
T  18104176 ttttcatcatgttcataggcttgaatgttaaaag 18104143  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 34273085 - 34273122
Alignment:
Q  163 cctgcaagcacgttaactctccaatgctcaagtcagta 200  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  34273085 cctgcaagcacgttagcactccaatgctcaagtcagta 34273122  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 572
Target Start/End: Complemental strand, 24750523 - 24750424
Alignment:
Q  474 tttattgcttgcatgatcaaactag-aaatccaatgacatatttgtgcaatggtttctcagaaaagtttgaatgctcgtc-ttgttcttaagtttgaatg 571  Q
    |||||| ||| || ||||||||||  |||||| ||||||||||||||||||  |||||||||||| |||||||| || || |||||| ||||||||||||    
T  24750523 tttattactttcaagatcaaactactaaatcctatgacatatttgtgcaat-atttctcagaaaactttgaatgttcatcattgttcataagtttgaatg 24750425  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 23413045 - 23412987
Alignment:
Q  446 tttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatcc 504  Q
    ||||| ||||||||| |  |||||||| || |||||||||| |||||||||||||||||    
T  23413045 tttttcgtaaacaagtgctagttttagattaattgcttgcaggatcaaactagaaatcc 23412987  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 595
Target Start/End: Original strand, 10398625 - 10398774
Alignment:
Q  446 tttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatccaatgacatatttgtgcaatggtttctcagaaaa-gtttgaa 544  Q
    |||||||||||||||    |||||||| | ||||||||||| |||||||||||||| || | |||||| ||||||||  |||| ||| |||| |||||||    
T  10398625 tttttggtaaacaagttctagttttagatctattgcttgcaggatcaaactagaaaccctaggacata-ttgtgcaaatgtttttcaaaaaatgtttgaa 10398723  T
Q  545 tgctcgtcttgttcttaagtttgaatgtgaaaaggatgaagataactgtct 595  Q
    |  || |  ||||| | ||||||||||| |||| ||| ||||||| |||||    
T  10398724 tattcatggtgttcctgagtttgaatgtaaaaaagatcaagataattgtct 10398774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 8946408 - 8946465
Alignment:
Q  446 tttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatc 503  Q
    |||||||||||||||||  |||||||  ||||||||||||| |||||||||| |||||    
T  8946408 tttttggtaaacaagcgcaagttttaagtttattgcttgcaggatcaaactaaaaatc 8946465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 211 - 364
Target Start/End: Original strand, 11672890 - 11673043
Alignment:
Q  211 agaggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgag-gaggacgataattgtctccc 309  Q
    ||||||||| ||||||| ||| |||| | ||||||||||||| |||||| ||| | || |||||||||||| || |||  || |  | ||| || || |     
T  11672890 agaggtggaatgtgtgcaaaaattggataaatgaaagtgtactttgagcatgatattgggtcacgcttatacag-tgattgatgttggtaactgccttcg 11672988  T
Q  310 tattatgcggcgtgaatcttggaagcagttagagatgaatctgacggctaggatt 364  Q
     ||| ||| ||||||||| ||||||||||||||||||| |||| ||| |||||||    
T  11672989 gattttgctgcgtgaatcctggaagcagttagagatgattctggcggttaggatt 11673043  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 42479581 - 42479540
Alignment:
Q  156 aatggtgcctgcaagcacgttaactctccaatgctcaagtca 197  Q
    |||||||| ||||||||||||||| |||||| ||||||||||    
T  42479581 aatggtgcatgcaagcacgttaacactccaacgctcaagtca 42479540  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 503
Target Start/End: Complemental strand, 8991 - 8922
Alignment:
Q  434 tgtttactgttatttttggtaaacaagcgtcagttttagttttattgcttgcatgatcaaactagaaatc 503  Q
    ||||||||| | ||||||||||||||||||||||||||| || ||| |||| |  ||||||||| |||||    
T  8991 tgtttactgatgtttttggtaaacaagcgtcagttttagattaattacttgtagaatcaaactaaaaatc 8922  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 478 - 512
Target Start/End: Original strand, 31483284 - 31483318
Alignment:
Q  478 ttgcttgcatgatcaaactagaaatccaatgacat 512  Q
    ||||||||||||||||||||||||||| |||||||    
T  31483284 ttgcttgcatgatcaaactagaaatcctatgacat 31483318  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 2837255 - 2837194
Alignment:
Q  249 gtaccttgagcgtgacactgagtcacgcttatatagctgaggaggacgataattgtctccct 310  Q
    |||||||||| ||||||||||||  |||||||||||  |||||||  ||| |||||||||||    
T  2837255 gtaccttgagtgtgacactgagttgcgcttatataggcgaggaggttgatgattgtctccct 2837194  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 9007873 - 9007832
Alignment:
Q  159 ggtgcctgcaagcacgttaactctccaatgctcaagtcagta 200  Q
    |||||||||| |||||||||| |||||| |||||||||||||    
T  9007873 ggtgcctgcaggcacgttaacactccaacgctcaagtcagta 9007832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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