View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9515_3 (Length: 356)
Name: NF9515_3
Description: NF9515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9515_3 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 350
Target Start/End: Original strand, 3532040 - 3532360
Alignment:
| Q |
29 |
aaataatgctttgatttaatttggtgatacaggtccggcctgctaagtaatatataatatatactagaaagtttcttttccttgaatttgaatttattaa |
128 |
Q |
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| T |
3532040 |
aaataatgctttgatttaatttggtgatacaggtccggcctgctaagtaatatataatatatactagaaagtttcttttccttgaatttgaatttattaa |
3532139 |
T |
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| Q |
129 |
-tagcgccggtgactctttcattgaatatgcatcccagaagaaaagtgaaataatgtgattgatgcaggagctatttttggggagattctctacnnnnnn |
227 |
Q |
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| T |
3532140 |
ttagcgccggtgactctttcattgaatatgcatcccagaagaaaagtgaaataatgtgattgatgcaggagctatttttggggagattctctactttttt |
3532239 |
T |
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| Q |
228 |
nncgtaaaaattatattcttactttgtctttatttgatccatatctgtcaaatcttaattactcttcaaagagagtctttttgagttgctttagagagtt |
327 |
Q |
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| T |
3532240 |
ttcatcaaaattatattcttactttgtctttatttgatccatatctgtcaaatcttaattactcttcaa--agagtctttttgagttgctttagagagtt |
3532337 |
T |
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| Q |
328 |
taagggatgcaattgtgacaata |
350 |
Q |
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||||||||||||||||||||||| |
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| T |
3532338 |
taagggatgcaattgtgacaata |
3532360 |
T |
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