View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9515_4 (Length: 336)
Name: NF9515_4
Description: NF9515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9515_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 11903303 - 11902968
Alignment:
| Q |
1 |
ttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgaccacagtcattgatggaagtgtacg |
100 |
Q |
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| T |
11903303 |
ttggtttcgaaccaatttggatccgttctctccatgaaacctttgatgtggaatacattgctaacttagctatgaccacagtcattgatggaagtgtacg |
11903204 |
T |
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| Q |
101 |
ccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatctggcggtaccagttgggcaata |
200 |
Q |
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| T |
11903203 |
ccgcctacttgtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatctggcggtaccagttgggcaata |
11903104 |
T |
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| Q |
201 |
ctcatcactacacgtagcaactatgtcgccgataatatttctgttgccaggtatgttttgaaagggcttaacagacatgaatctcaattgttattccaac |
300 |
Q |
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| T |
11903103 |
ctcatcactacacgtagcaactatgtcgccgataatatttctgttgccaggtatgttttgaaagggcttaacagacatgaatctcaattgttattccaac |
11903004 |
T |
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| Q |
301 |
aaattcgtgggccaacttcaacttcaaccaacaaca |
336 |
Q |
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| T |
11903003 |
aaattcgtgggcaaacttcaacctcaaccaacaaca |
11902968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 11731009 - 11731119
Alignment:
| Q |
111 |
gtgctcgatgatttgcgaattgagattaagcatgatcttgaaaagttgcaaaagaaattaactgaatctggcggtaccagttgggcaatactcatcacta |
210 |
Q |
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| T |
11731009 |
gtgcttgatgatttgagaaatgagattaagaatgatctcgagaagttgcagcaacgattaaaggagtcttgtggtaccggttgtgcaatactcatcacta |
11731108 |
T |
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| Q |
211 |
cacgtagcaac |
221 |
Q |
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| T |
11731109 |
cacgtagcaac |
11731119 |
T |
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