View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_2 (Length: 325)
Name: NF9516_2
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_2 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 52988172 - 52987858
Alignment:
| Q |
10 |
agatgaaatatctattgacatcataaccgagcacgttgaattagcctcgatgcatggttgttcaagtctggcagagaaagaaaaagattcttgtacagac |
109 |
Q |
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| T |
52988172 |
agatgaaatatctattgacatcataaccgagcacgttgaattagcctcgatgcatggttgttcaaatctggcagagaaagaaaaagattcttgtaaagac |
52988073 |
T |
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| Q |
110 |
tgccccaaattgcctgttgtgtgtggtggctgtgagggtccagatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatcg |
209 |
Q |
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| T |
52988072 |
tgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatag |
52987973 |
T |
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| Q |
210 |
aatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatggacattc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987972 |
aatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatggacattc |
52987873 |
T |
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| Q |
310 |
aggggctggtagttt |
324 |
Q |
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| T |
52987872 |
aggggctggtagttt |
52987858 |
T |
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