View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_low_1 (Length: 506)
Name: NF9516_low_1
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_low_1 |
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| [»] chr8 (11 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 2432586 - 2432081
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432586 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
2432487 |
T |
|
| Q |
101 |
tggaaagtacctaatttacatacattgatatcaatatcaactactcattagtgtgtctcatgtttctaagcgtagtaagtagtaactatgaagcaccgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432486 |
tggaaagtacctaatttacatacattgatatcaatatcaactactcattagtgtgtctcatgtttctaagcgtagtaagtagtaactatgaagcaccgac |
2432387 |
T |
|
| Q |
201 |
acagattgatactaacactgatgcatagacatggcaataatttggaaaaatagaagtgagtagtgactgtatgtatttgtaagtgactgtgttgtgctgg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432386 |
acagattgatactaacactgatgcatagacatggcaataatttggaaaaatagaagtgagtagtgactgtatgtatttgtaagtgactgtgttgtgctgg |
2432287 |
T |
|
| Q |
301 |
tgtaggacacaccttcaatataacttgtcgatataacatgtcgatgctacagcatgtgtaggacacaccttcaatattacgcgtcgatgttacataggta |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2432286 |
tgtaggacacaccttcaatataatgtgtcgatataacatgtcgatgctacagcatgtgtaggacacaccttcaatataacgcgtcgatgttacataggta |
2432187 |
T |
|
| Q |
401 |
actacaatttgtgtcaataaaaaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgt |
500 |
Q |
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||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2432186 |
actacaatttgcgtcaataaaaaatttgattaaaattctgccataaaattgttaataacagacctttttaaagctgcattgaggtcaggttcttctttgt |
2432087 |
T |
|
| Q |
501 |
agttaa |
506 |
Q |
| |
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|||||| |
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| T |
2432086 |
agttaa |
2432081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2516408 - 2516539
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516408 |
tcattccacacacaggtatgcggccatggagtttcatattcaagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
2516507 |
T |
|
| Q |
101 |
tggaaagtacctaatttacatacattgatatc |
132 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |
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| T |
2516508 |
tggaaagtacctaatttacataaattgatatc |
2516539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2429604 - 2429473
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2429604 |
tcattccacacacaggtatccgcccatggagtttcatattcaagagtacagcatcaagtgtctttccccccacattctcaaagtaaatgtcaatgccttc |
2429505 |
T |
|
| Q |
101 |
tggaaagtacctaatttacatacattgatatc |
132 |
Q |
| |
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||||||||| ||| |||||||| ||||||||| |
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| T |
2429504 |
tggaaagtatctagtttacataaattgatatc |
2429473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2435947 - 2435816
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||| || || |||||||||||||||||||||||||||||||| |
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| T |
2435947 |
tcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagtaaatgtcaatgccttc |
2435848 |
T |
|
| Q |
101 |
tggaaagtacctaatttacatacattgatatc |
132 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |
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|
| T |
2435847 |
tggaaagtacctaatatacataaattgatatc |
2435816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2496835 - 2496951
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| | ||||||||||||| |||| | |||| |||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
2496835 |
tcattccacatgcaggtatgcggccgtggactctcatgttcaagagtacagcatcaagtgtcttgcctccaacattctcaaagtaaatatcaatgccttc |
2496934 |
T |
|
| Q |
101 |
tggaaagtacctaattt |
117 |
Q |
| |
|
|| |||| ||| |||| |
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|
| T |
2496935 |
agggaagtgcctgattt |
2496951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2512137 - 2512253
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||| |||||| ||||| |
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| T |
2512137 |
tcattccacacacaggtatgcgaccatgtagtttcatgttcaagagtacggcatcaagtgtcttgcctccaacgttctcaaagtaaacgtcaattccttc |
2512236 |
T |
|
| Q |
101 |
tggaaagtacctaattt |
117 |
Q |
| |
|
|||||||| ||| |||| |
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| T |
2512237 |
tggaaagtgcctgattt |
2512253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 2435609 - 2435516
Alignment:
| Q |
412 |
tgtcaataaaaaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgtagttaa |
506 |
Q |
| |
|
|||||||||| || |||||| |||||||| ||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
2435609 |
tgtcaataaacaaattgatt-aaaatctgccataaaaatgttaaaaacagacctttttaaagttgcattgaggtctggttcttctttgtagttaa |
2435516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 1459551 - 1459456
Alignment:
| Q |
412 |
tgtcaataaa-aaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgtagttaa |
506 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| ||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
1459551 |
tgtcaataaacaaattaaattaaaaatctaccataaaaatgttaaaaacagaccttttcaaagctgcattgaggtctggttcttctttgtagttaa |
1459456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 2429258 - 2429163
Alignment:
| Q |
412 |
tgtcaataaa-aaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgtagttaa |
506 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| ||||||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
2429258 |
tgtcaataaacaaattaaattaaaaatctaccataaaaatgttaaaaacagaccttttcaaagctgcattgaggtctggttcttctttgtagttaa |
2429163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2505516 - 2505637
Alignment:
| Q |
1 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| ||||||||||| || || | | |||| ||||||||||| || ||||||||||| || || || ||||||||||||| ||||||||||| |
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|
| T |
2505516 |
tcattccacacacaggtatgcgaccttgtaatctcatgttcaagagtacggcatcaagtgtcttgccaccgacgttctcaaagtaaacatcaatgccttc |
2505615 |
T |
|
| Q |
101 |
tggaaagtacctaatttacata |
122 |
Q |
| |
|
|||||||| ||| ||| ||||| |
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| T |
2505616 |
tggaaagtgcctgattcacata |
2505637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 506
Target Start/End: Original strand, 2516645 - 2516690
Alignment:
| Q |
461 |
gacctttttaaagctgcattgaggtcatgttcttctttgtagttaa |
506 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2516645 |
gacctttttaatgctgcattgaggtcatgttcttctttgtagttaa |
2516690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 41540509 - 41540465
Alignment:
| Q |
69 |
ccaacattctcaaagtaaatgtcaatgccttctggaaagtaccta |
113 |
Q |
| |
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|||||||| |||||||| |||||||| ||||| |||||||||||| |
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|
| T |
41540509 |
ccaacattgtcaaagtatatgtcaattccttcgggaaagtaccta |
41540465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 1083134 - 1083170
Alignment:
| Q |
63 |
tttcccccaacattctcaaagtaaatgtcaatgcctt |
99 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1083134 |
tttcccccaacattgtcaaagttaatgtcaatgcctt |
1083170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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