View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_low_2 (Length: 375)
Name: NF9516_low_2
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 43213452 - 43213278
Alignment:
| Q |
17 |
atataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatg |
116 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43213452 |
atataaacatccagttgtagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgagatggatgctcttcttatg |
43213353 |
T |
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| Q |
117 |
caggtacgtaagtccacatttttactttctgaatgttttggttttcaattattattactttccacatgcatgcaa |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43213352 |
caggtacgtaagtccacatttttactttctgaatgttttggttttcaattattattactttccacatgcatgcaa |
43213278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 41654711 - 41654884
Alignment:
| Q |
17 |
atataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatg |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
41654711 |
atataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctctcagagctgaaatggatgctcttcttatg |
41654810 |
T |
|
| Q |
117 |
caggtacgtaagtccacatttttactttctgaatgttttggttttcaattattattactttccacatgcatgca |
190 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654811 |
caggtacgtaggtccacatttttactttctgaatgttttggttttcaattattattactttccacatgcatgca |
41654884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 43228002 - 43227884
Alignment:
| Q |
3 |
gagtttggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatgg |
102 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43228002 |
gagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgttgctcttagagctgacatgg |
43227903 |
T |
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| Q |
103 |
atgctcttcttatgcaggt |
121 |
Q |
| |
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|||||||||| |||||||| |
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| T |
43227902 |
atgctcttctcatgcaggt |
43227884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 43224195 - 43224083
Alignment:
| Q |
9 |
ggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctc |
108 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224195 |
ggtgttcaatataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctc |
43224096 |
T |
|
| Q |
109 |
ttcttatgcaggt |
121 |
Q |
| |
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|||| |||||||| |
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| T |
43224095 |
ttctcatgcaggt |
43224083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 43206492 - 43206374
Alignment:
| Q |
3 |
gagtttggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatgg |
102 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
43206492 |
gagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgttgctcttagagctgatatgg |
43206393 |
T |
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| Q |
103 |
atgctcttcttatgcaggt |
121 |
Q |
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||||||||||||| ||||| |
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| T |
43206392 |
atgctcttcttattcaggt |
43206374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 41650171 - 41650276
Alignment:
| Q |
17 |
atataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| |
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| T |
41650171 |
atataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatg |
41650270 |
T |
|
| Q |
117 |
caggta |
122 |
Q |
| |
|
|||||| |
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| T |
41650271 |
caggta |
41650276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 43213152 - 43213106
Alignment:
| Q |
323 |
cactctaaattcgttgatgattttttgttgttgttaacttcaggaat |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43213152 |
cactctaaattcgttgatgattttttgttgttgttaacttcaggaat |
43213106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 5073719 - 5073616
Alignment:
| Q |
18 |
tataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatgc |
117 |
Q |
| |
|
|||||| ||||||||||| | || ||||| ||||||| |||||||||||| | |||||||||| ||| | |||||||| |||||||||||| ||||| |
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| T |
5073719 |
tataaatatccagttgcaatcactggtgtcattggtttcataggaactggattgtctccttttgttgctttaagagctgatatggatgctctttctatgc |
5073620 |
T |
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| Q |
118 |
aggt |
121 |
Q |
| |
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|||| |
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|
| T |
5073619 |
aggt |
5073616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 31839492 - 31839458
Alignment:
| Q |
73 |
ctccttttgtcgctcttagagctgacatggatgct |
107 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
31839492 |
ctccttttgttgctcttagagctgacatggatgct |
31839458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 26262851 - 26262888
Alignment:
| Q |
70 |
ttcctccttttgtcgctcttagagctgacatggatgct |
107 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
26262851 |
ttcctccatttgttgctcttagagctgacatggatgct |
26262888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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