View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_low_3 (Length: 255)
Name: NF9516_low_3
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 13079933 - 13079706
Alignment:
| Q |
12 |
aaaggaggttatgaaagaagcattggttgaaagtgaaagttcgatggaaaagacacaagaagaagaattcaaggagagaattgtggccaaaagagtcgag |
111 |
Q |
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| T |
13079933 |
aaaggaggttatgaaagaagcattggttgaaagtgaaagttcgatggaaaagacacaagaagaagaattcaaggagagaattgtggccaaaagagtcgag |
13079834 |
T |
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| Q |
112 |
gatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagccttttgagggagacacaa |
211 |
Q |
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| T |
13079833 |
gatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagccttttgagggagacacta |
13079734 |
T |
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| Q |
212 |
ctagagatagaattgagaaggaaattat |
239 |
Q |
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| T |
13079733 |
ctagagatagaattgagaaggaaattat |
13079706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 13075639 - 13075499
Alignment:
| Q |
99 |
caaaagagtcgaggatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagcctttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075639 |
caaaagagtcgaggatgaggaaaataaaattgaatatgctatagtgaagttgaaaggagagggatttacaaagctaaatgttgaaccaaatgagcctttt |
13075540 |
T |
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| Q |
199 |
gagggagacacaactagagatagaattgagaaggaaattat |
239 |
Q |
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| T |
13075539 |
gagggagacacaactagagacagaattgagaaggaaattat |
13075499 |
T |
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