View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_low_4 (Length: 250)
Name: NF9516_low_4
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4091216 - 4090976
Alignment:
| Q |
1 |
atctggcaatccatcaccatctccatctttttcacaaattaggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaagg |
100 |
Q |
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| T |
4091216 |
atctggcaatccatcaccatctccatctttttcacaaatttggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaagg |
4091117 |
T |
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| Q |
101 |
taggaaatcggcttctcaattagtttttccaaaaggcctctcttttcaaaatgagaactcattgagcagttcatctcagcaaaatctgattcatttcgaa |
200 |
Q |
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| T |
4091116 |
taggaaatcggcttctcaattagtttttccaaaaggcctctcttttcaaagtgagaactcattgagcagttcatctcagcaaaatctgattcatttcgaa |
4091017 |
T |
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| Q |
201 |
ctaatgtcacaatcatctgtccataacctgcaatcacctcc |
241 |
Q |
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| T |
4091016 |
ctgatgtcacaatcatctgtccataacctgcaatcacctcc |
4090976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 42593600 - 42593711
Alignment:
| Q |
24 |
catctttttcacaaattaggtgaatgaacaccacaaatgcaaccaatgtaaagataaaaagagaagctttgtcaaggtaggaaatcggcttctcaattag |
123 |
Q |
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||||||||| ||| |||||| ||||||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42593600 |
catcttttttacatattaggcgaatgaacaacacaagtgcaacaagtgtaaagacaaaaagagaagctttgtcaaggtaggaaattggcttctcaattag |
42593699 |
T |
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| Q |
124 |
tttttccaaaag |
135 |
Q |
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| T |
42593700 |
actttccaaaag |
42593711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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