View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_low_5 (Length: 239)
Name: NF9516_low_5
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4091274 - 4091497
Alignment:
| Q |
1 |
agaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaatgccacttatggttactttttctctccattaccaca |
100 |
Q |
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| T |
4091274 |
agaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaatgccacgtatggttactttttctctccattaccaca |
4091373 |
T |
|
| Q |
101 |
ttaatgatgtagtgccagacgaagaagctgtttttaatgatttatctgcttgtacaaccatggggttggtaactgtcatctgcgttgatgtatctggtag |
200 |
Q |
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| T |
4091374 |
ttaatgatgtagtgccagacgaagaagctgtttttaatgatttatctgcttgtacaaccatggggttggtaactgtcatctgcgttgatgtatctggtag |
4091473 |
T |
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| Q |
201 |
gcttatttctaaaccaatggaggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4091474 |
gcttatttctaaaccaatggaggt |
4091497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 42593509 - 42593314
Alignment:
| Q |
2 |
gaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaatgccacttatggttactttttctctccattaccacat |
101 |
Q |
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||||||||||||||||| | ||| || |||||| | || |||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||||||| | |
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| T |
42593509 |
gaggaaggatttccattttggcaggtctttttagtgttgtaatactgtgtgtgcaacatggagtgccaattatggttactctttctctccattaccagaa |
42593410 |
T |
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| Q |
102 |
taatgatgtagtgccagacgaagaagctgtttttaatgatttatctgcttgtacaaccatggggttggtaactgtcatctgcgttgatgtatctgg |
197 |
Q |
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| || | |||||| || ||||||| ||| |||||||||| || |||||||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
42593409 |
tgataaggtagtgttggatcaagaagccgttcttaatgatttgtcaacttgtacaacaatggggttggtaactgtcatctgcatcgatgtatctgg |
42593314 |
T |
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