View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9516_low_6 (Length: 237)
Name: NF9516_low_6
Description: NF9516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9516_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 53589231 - 53589431
Alignment:
| Q |
17 |
caaaggcgtaacgactgtgccttggagcattctaatggtccatatggtgagaacattttctggggtagtggtgttgggtggaatccagcacaagcagtaa |
116 |
Q |
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| T |
53589231 |
caaaggcgtaacgactgtgccttggagcattctaatggtccatatggtgagaacattttctggggtagtggtgttggatggaatccagcacaggcagtaa |
53589330 |
T |
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| Q |
117 |
gtgcttgggttgatgagaaacagttttacaattattggcacaactcttgtgttgatggagaaatgtgtggacattatacacaggttgtttggggtagcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53589331 |
gtgcttgggttgatgagaaacagttttacaattattggcacaactcttgtgttgatggagaaatgtgtggacattatacacaggttgtttggggtagcac |
53589430 |
T |
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| Q |
217 |
t |
217 |
Q |
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| T |
53589431 |
t |
53589431 |
T |
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