View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9517_low_1 (Length: 599)
Name: NF9517_low_1
Description: NF9517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9517_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 5445512 - 5444930
Alignment:
| Q |
1 |
ttcctttaacttagacaacaccatggaagatatctcttgaggtgaaaaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtgg |
100 |
Q |
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| T |
5445512 |
ttcctttaacttagacaacaccatggaagatatctcttgaggtgaaaaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtgg |
5445413 |
T |
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| Q |
101 |
ttcggaacaactttaaaaggccaaagctttatgtcttgttggactgtttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgt |
200 |
Q |
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| T |
5445412 |
ttcggaacaactttaaaaggccaaagctttatgtcttgttggactgtttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgt |
5445313 |
T |
|
| Q |
201 |
ggggatttttggctaattggtttttggcagcatcgcctattaatctttcagtgtcggtgaaggcaacgtaagaaggggtgacacggttcccttggtcgtt |
300 |
Q |
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| T |
5445312 |
ggggatatttggctaattggtttttggcagcatcgcctattaatctttcagtgtcagtgaaggcaacgtaagaaggggtgacacggttcccttggtcgtt |
5445213 |
T |
|
| Q |
301 |
tggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgca |
400 |
Q |
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| T |
5445212 |
tggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgca |
5445113 |
T |
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| Q |
401 |
cttaatttgagaggagagaacaaaagaagaatggcgttttggttagtgaactgagaatatggatctgattgatcaaaaggtagtttttataggcctaaga |
500 |
Q |
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| T |
5445112 |
cttaatttgagaggagagaacaaaagaagaatggtgttttggttagtgaaccgagaatatggatctgattgatcaaaaggtagtttttataggcataaga |
5445013 |
T |
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| Q |
501 |
gaacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattggccaagtgttgagggatt |
583 |
Q |
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| T |
5445012 |
gaacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggatt |
5444930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 291 - 478
Target Start/End: Original strand, 5440993 - 5441182
Alignment:
| Q |
291 |
cttggtcgtttggaatgatctcaacacgattgtttcgccacactgcaatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgt |
390 |
Q |
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| T |
5440993 |
cttggtcgtttggaatgatctcaacatgattgtgttgccactctcaaatgcagctgtaggttgtgccaatgtcgatgccaatggcttttctttttgttat |
5441092 |
T |
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| Q |
391 |
tgccattgca---cttaatttgagaggagagaacaaaagaagaatggcgttttggttagtgaactgagaatatggatctgattgatcaaaa |
478 |
Q |
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| T |
5441093 |
tgccacgacaaacgagagtttgagaggagagaacaaaagaa-aatgatgttttgggtagtaaactgaaaatctggatgtgattgataaaaa |
5441182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 10688291 - 10688218
Alignment:
| Q |
502 |
aacatttttcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattggccaagtgttgagggatt |
583 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||| |
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| T |
10688291 |
aacatttttcagaaaagttggggaatt--------gtatggaaaatatacaaggagaataattgtgcaagtgttgtgggatt |
10688218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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