View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9517_low_2 (Length: 577)
Name: NF9517_low_2
Description: NF9517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9517_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 370 - 563
Target Start/End: Original strand, 41873716 - 41873910
Alignment:
| Q |
370 |
gatagaatcactaactcaagttatttaataag-attcagatgaaatttcatttaaaaataaaataatactattttgttcttacttccaggtataggttaa |
468 |
Q |
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| T |
41873716 |
gatagaatcactaactcaagttatttaataaggattcgcatgaaatttcatttaaaaataaaataatactattttgttcttacttccaggtataggttaa |
41873815 |
T |
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| Q |
469 |
atacttaattgggcaatcaaaagattcttttctacaaagttgatctaaattcttctccttgagtcagcaaatttaaattactttcctttgatgtc |
563 |
Q |
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| T |
41873816 |
atacttaattgggcaatcaaaagattcttttctacaaagttgatctaaattcttctccttgagtcagcaaatttaaattactttcctttcatgtc |
41873910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 41873120 - 41873268
Alignment:
| Q |
20 |
tcctcgttgttgtttaatgttgatgatattgaagatgaaatgttgaggaagaagaagcaggtgttgccacatagcaagcaatttcggtaagaatttaaat |
119 |
Q |
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| T |
41873120 |
tcctcgttgttgtttaatgttgatgatattgaagatgaaatgttgaggaagaagaagcaggtgttgccacatagcaagcaatttcggtaagaatttaaat |
41873219 |
T |
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| Q |
120 |
ttactatagcgttctttgtgatgacatttttgctgataacctagtgaca |
168 |
Q |
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| T |
41873220 |
ttactatagcgttctttgtgatgacatttttgctgataacctagtgaca |
41873268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 255 - 362
Target Start/End: Original strand, 41873351 - 41873458
Alignment:
| Q |
255 |
ctagttggagtcaaattcacttatttgatgttcttcggtcccataatataaattatttagcaagtaaattgttttttgacatgtagtatatcgttttgta |
354 |
Q |
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| T |
41873351 |
ctagttggagtcaaattcacttatttgatgttcttcggtcccataatataaatgatttagcaagtaaattgttttttgacatgtagtatgtcgttttgta |
41873450 |
T |
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| Q |
355 |
gtatcaat |
362 |
Q |
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|||||||| |
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| T |
41873451 |
gtatcaat |
41873458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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