View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9517_low_5 (Length: 500)
Name: NF9517_low_5
Description: NF9517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9517_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 151 - 384
Target Start/End: Original strand, 8317090 - 8317321
Alignment:
| Q |
151 |
tgcctcaaagcatgtcttcaaataatatttttcttgaaatcttcaatcaagattatgctccttgccgataagcttggtctagggaatttaacgtttaata |
250 |
Q |
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| T |
8317090 |
tgcctcaaagcatgtcttcaaataatatttttcttgaaatcttcaatcaagattatgctccttgccgataagcttggtctagggaatttaacgtttaata |
8317189 |
T |
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| Q |
251 |
acggggtgattcatgttgagttcattttgccaaatgatttagtattggacttgacttcatacttggtttgttgaccagatgtagatgatgttagtcttca |
350 |
Q |
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| T |
8317190 |
actgggtgattcatgttgagttcattttgccaaatgatttagtattggacttgacttcatacttggtttgttgaccagatgtagatgatgttagtcttca |
8317289 |
T |
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| Q |
351 |
aatatatcatgataagtta-gggggatggttgtgt |
384 |
Q |
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| T |
8317290 |
aatat---atgatgagttaggggggatggttgtgt |
8317321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 8317474 - 8317592
Alignment:
| Q |
376 |
tggttgtgttgacggatcatttgagcttgataaagacaaaaatgtcataaattgtgttccatatggttttcctgagtgctgattctgacaggttgatctt |
475 |
Q |
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| T |
8317474 |
tggttgtgttgacggatcatttgagcttgataaagacaaaac-gtcataaattgtgttccatatggttttcctgagtgctgattctgacaggttgatctt |
8317572 |
T |
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| Q |
476 |
gagcttattccaaacgatat |
495 |
Q |
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| T |
8317573 |
cagcttattccaaacgatat |
8317592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 8317017 - 8317092
Alignment:
| Q |
8 |
ttggtgttttaagatgagacaagagttcgtataaagaattattatgcacttgtacagtttcaaagtgataacatgc |
83 |
Q |
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| T |
8317017 |
ttggggttttaagatgagacaagagttcgtataaagaattattgtgcacttgtacagtttcgaggtgataacatgc |
8317092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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