View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9517_low_8 (Length: 335)
Name: NF9517_low_8
Description: NF9517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9517_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 10008193 - 10007886
Alignment:
| Q |
18 |
tatatgtactcgtccaagagattgtgagtcaggtttgccatctacagctcactgttttcattcttattttataactagtcaatgcaaatggtatgaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10008193 |
tatatgtactcgtccaagagattgtgagtcaggtttgccatctacagctcactgttttcattcttattttacaactagtcaatgcaaatggtatgaaaac |
10008094 |
T |
|
| Q |
118 |
attacaaacataatgttttgcatgcaaaaaagaatgggcatgcatcttaataactgatgaacatctattctttaggtttatggaattattaagttgtatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10008093 |
attacaaacataatgttttgcatgcaaaaaagaatgggcatgcatcttaataactgatgaacatctattctttaggtttatggaattattaagttgtatt |
10007994 |
T |
|
| Q |
218 |
tttaacgtttgcctttcaagttaatgatcgtatttgtaactttggtttggaatttccttatgcataaaaaagaagtgtatgaaaatctttattaaagctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10007993 |
tttaacgtttgcctttcaagttaatgatcgtatttgtaactttggtttggaatttccttatgcataaaaaagaagtgtatgaaaatctttattaaagctt |
10007894 |
T |
|
| Q |
318 |
gacctttg |
325 |
Q |
| |
|
| |||||| |
|
|
| T |
10007893 |
ggcctttg |
10007886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University