View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9518_4 (Length: 355)
Name: NF9518_4
Description: NF9518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9518_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 26 - 355
Target Start/End: Complemental strand, 37934512 - 37934183
Alignment:
| Q |
26 |
aaatggggggtcaggaatataacaaggtggactgaattacagaaagctaaatacttttccaagtcgggtttcttggatgcgaatctaggccatagtgcaa |
125 |
Q |
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| T |
37934512 |
aaatggggggtcaggaatataacaaggtggactgaattacagaaagctaaatacttttccaagtcgggtttcttggatgcgaatctaggccatagtgcaa |
37934413 |
T |
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| Q |
126 |
gctttacgttgaagagtatatgtagttctattctgttaatttcccttggttatagatggcacattggcacaggtaatcaaatcaatgtttggactgatct |
225 |
Q |
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| T |
37934412 |
actttacgttgaagagtatatgtagttctattctgttaatttcccttggttatagatggcacattggcacgggtactcaaatcaatgtttggactgatct |
37934313 |
T |
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| Q |
226 |
ccgatcaaacattgtgtcatatttaatttgtttgatccacttaccaattcatgaaggtatgatcttgtcaattttatccttaaccaaaatgatgttgatg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37934312 |
ccgatcaaacattgtgtcatatttaatttgtttgatccacttaccaattcatgaaggtatgatcttgtcaattttatccttaaccaaaatgatgttgatg |
37934213 |
T |
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| Q |
326 |
cagtacttcagatgtccctcaactcccgtt |
355 |
Q |
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| T |
37934212 |
cagtacttcagatgtccctcaactcccgtt |
37934183 |
T |
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