View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9518_low_1 (Length: 357)
Name: NF9518_low_1
Description: NF9518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9518_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 33840614 - 33840310
Alignment:
| Q |
18 |
atatagtgtgcaaatttataacgcggtggagaaaatttgttgagagttgaatttgattgtactatacagtgctatgttcgattagatgaacgacacgttt |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33840614 |
atatagtttgcaaatttataacgcggtggagaaaatttgttgagagttgaatttgattgtactatacagtgctgtgttcgattagatgaacgacacgttt |
33840515 |
T |
|
| Q |
118 |
gaaagataagatggatgagtgacacacattttttatgctatgggtgtgagaggcccatttcagttgacattatgatcgtccgcatgatggagaagtacgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33840514 |
gaaagataagatggatgagtgacacacattttttatgctatgcgtgtgagaggcccatttcagttgacattatgattgtccgcatgatggagaagtacgg |
33840415 |
T |
|
| Q |
218 |
agtagtaaaagagagacatgattcattttaatatcacnnnnnnnttatgaatacgttttctttaggtaatcaaaatgagatatattaataa-aacgacga |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||| | | ||||||||||||||||||||| |||||||| |
|
|
| T |
33840414 |
agtagtaaaagagagacgtgattcattttaatatc-ccaaaaaattatgaatatgttttctttaagaagacaaaatgagatatattaataataacgacga |
33840316 |
T |
|
| Q |
317 |
ttcatc |
322 |
Q |
| |
|
|||||| |
|
|
| T |
33840315 |
ttcatc |
33840310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University