View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9519_low_2 (Length: 569)
Name: NF9519_low_2
Description: NF9519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9519_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 15 - 555
Target Start/End: Complemental strand, 6624035 - 6623495
Alignment:
| Q |
15 |
gttattgtcccagcgaactgttcttgtttaaccaatgattattacaaagctgaaaccaaatatacattgggtccaaacccaacatatttcatagtagcaa |
114 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6624035 |
gttattgtcccagtgaactgttcttgtttaaccaatgattattacaaagctgaaaccaaatatatattgggtccaaacccaacatatttcatagtagcaa |
6623936 |
T |
|
| Q |
115 |
acgacacgttccagggtttgtccacatgtgattctcttatgcgtgcgaatccgtatggagaacttgatttgcttcgaggaatggagttgaatgtgccact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623935 |
acgacacgttccagggtttgtccacatgtgattctcttatgcgtgcgaatccgtatggagaacttgatttgcttcgaggaatggagttgaatgtgccact |
6623836 |
T |
|
| Q |
215 |
ccgatgcgcgtgtccaacatatcatcagaaaacaaatggcaccaagtacttactcacatattctgtgacctggggtgataacatttcaaatatcgctaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6623835 |
ccgatgcgcgtgtccaacatatcatcagaaaacaaatggcaccaagtacttactcacatattctgtgacctggggtgataacatttcaaatattgctaca |
6623736 |
T |
|
| Q |
315 |
agattcaatgtaccagtgggtaatctaattgatgccaatggtttttccacacaaactgaactcctttttccattcactactgttctgattcctttggcaa |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623735 |
agattcaatataccagtgggtaatctaattgatgccaatggtttttccacacaaactgaactcctttttccattcactactgttctgattcctttggcaa |
6623636 |
T |
|
| Q |
415 |
gcgaaccagtgagtttaacaactatagttgctaatgatccaccaaaccctcttggttgcagcttcaaaaagtgcaagtcaaacacaaaagtactcctcat |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623635 |
gcgaaccagtgagtttaacaactatagttgctaatgatccaccaacccctcttggttgcagcttcaaaaagtgcaagtcaaacacaaaagtactcctcat |
6623536 |
T |
|
| Q |
515 |
tgctttaaccacctcactgctggttctgtgtgttttcttgt |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623535 |
tgctttaaccacctcactgctggttctgtgtgttttcttgt |
6623495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University