View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9519_low_8 (Length: 242)

Name: NF9519_low_8
Description: NF9519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9519_low_8
NF9519_low_8
[»] chr7 (7 HSPs)
chr7 (19-242)||(11242943-11243166)
chr7 (25-131)||(11267932-11268038)
chr7 (134-193)||(11281891-11281950)
chr7 (134-193)||(11268248-11268307)
chr7 (66-112)||(1864993-1865039)
chr7 (201-242)||(11268299-11268340)
chr7 (50-114)||(4873738-4873801)
[»] chr1 (5 HSPs)
chr1 (25-242)||(27319088-27319306)
chr1 (57-242)||(12726547-12726722)
chr1 (68-242)||(898471-898643)
chr1 (53-109)||(3362972-3363027)
chr1 (39-115)||(26290097-26290173)
[»] chr8 (2 HSPs)
chr8 (19-240)||(9797795-9798011)
chr8 (138-221)||(33167886-33167971)
[»] chr3 (1 HSPs)
chr3 (58-216)||(16998513-16998670)
[»] chr2 (3 HSPs)
chr2 (141-242)||(21515842-21515943)
chr2 (39-109)||(21511328-21511397)
chr2 (77-115)||(35407066-35407104)
[»] chr4 (4 HSPs)
chr4 (19-242)||(17465400-17465623)
chr4 (66-112)||(11376905-11376951)
chr4 (160-217)||(8898987-8899044)
chr4 (171-215)||(12272809-12272853)
[»] chr5 (2 HSPs)
chr5 (77-242)||(42687054-42687222)
chr5 (58-106)||(19222611-19222659)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 11243166 - 11242943
Alignment:
Q  19 atacgattctatctagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11243166 atacgattctatctagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggt 11243067  T
Q  119 tggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttcta 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11243066 tggtttcataatttttttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttcta 11242967  T
Q  219 tatctttaagttaaattcttttct 242  Q
    ||||||||||||||||||||||||    
T  11242966 tatctttaagttaaattcttttct 11242943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 11267932 - 11268038
Alignment:
Q  25 ttctatctagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggttt 124  Q
    |||||||  ||||||||||||||| || ||| ||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||    
T  11267932 ttctatcgtgtagtaaagattatcgtccacaaagagttatatgtaattatcgattttgttttttattatgcttagctgaaaagatcaagttggttggttt 11268031  T
Q  125 cataatt 131  Q
     ||||||    
T  11268032 tataatt 11268038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 11281950 - 11281891
Alignment:
Q  134 tttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaat 193  Q
    |||||||||||||| || ||||||  ||||||||||||||||||||||||||| ||||||    
T  11281950 tttgttaaaattcaaatcaaaaggtgtcatgggattgttggtttcatcttaatttcaaat 11281891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 11268248 - 11268307
Alignment:
Q  134 tttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaat 193  Q
    |||||||||||||| || ||||||  | ||||||||||||||||||||||||| ||||||    
T  11268248 tttgttaaaattcaaatcaaaaggtgttatgggattgttggtttcatcttaatttcaaat 11268307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 1865039 - 1864993
Alignment:
Q  66 tgtaattaacgatcttgtttttaattatgattagctgaaaagatcaa 112  Q
    |||||||| |||| || ||| ||||||||||||||||||||||||||    
T  1865039 tgtaattaccgattttctttctaattatgattagctgaaaagatcaa 1864993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 11268299 - 11268340
Alignment:
Q  201 atttcaaatctatttctatatctttaagttaaattcttttct 242  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||    
T  11268299 atttcaaatttatttctctatctttaaattaaattcttttct 11268340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 4873801 - 4873738
Alignment:
Q  50 tctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagt 114  Q
    ||||||||||||||| ||||||||  ||| | ||||| ||| |||||||||||||||||| ||||    
T  4873801 tctacagagagttat-tgtaattacagatttcgttttcaatgatgattagctgaaaagattaagt 4873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 27319306 - 27319088
Alignment:
Q  25 ttctatctagtagtaaa-gattatc-atctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggt 122  Q
    ||||||| ||||||||| ||||||| ||| | ||||||||| |  |||||| |||| ||| ||||| || |||||||||||||| || ||||||||||||    
T  27319306 ttctatcgagtagtaaaagattatcgatccatagagagttaaac-taattatcgattttgattttagttttgattagctgaaaatattaagttggttggt 27319208  T
Q  123 ttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatc 222  Q
    || ||||||  |||||| |||| || |||||||||| |||||| ||  ||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||    
T  27319207 tttataattgctttgttcaaatccaaattaaaaggcttcatggaatcattggtttcatcttaatgtctaatcataaacattccaaatttatttctctatc 27319108  T
Q  223 tttaagttaaattcttttct 242  Q
    ||||||||||||||||||||    
T  27319107 tttaagttaaattcttttct 27319088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 12726547 - 12726722
Alignment:
Q  57 agagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaag 156  Q
    ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||   |||||||||||||||||||||||    
T  12726547 agagttatatgtaattatcaatcttatttttaattgtgattggctgaaaagatcaaattggttggttttataatcgttttgttaaaattcagattaaaag 12726646  T
Q  157 gcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttct 242  Q
    || ||||||||    ||||||||||||||| || |||      |||| ||||||||||||| ||||||||||||||||||||||||    
T  12726647 gcgtcatggga----tggtttcatcttaatatcgaat------cattccaaatctatttctctatctttaagttaaattcttttct 12726722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 898643 - 898471
Alignment:
Q  68 taattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaaggcatcatggga 167  Q
    |||||| ||||||||||||||||| ||||||| ||| ||||| || || |||||||| ||||   ||| ||||||||||| |||||||||   |||||||    
T  898643 taattaccgatcttgtttttaattgtgattagttgacaagataaaatttgttggttttataaccggtt-gttaaaattcaaattaaaaggtgccatggga 898545  T
Q  168 ttgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttct 242  Q
    | |||| | ||||||||||||||| ||||||||||| ||| ||||||||| ||| ||||||||||||||||||||    
T  898544 tcgttgttctcatcttaatgtcaattcataaacattccaagtctatttctctat-tttaagttaaattcttttct 898471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 3362972 - 3363027
Alignment:
Q  53 acagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagat 109  Q
    |||||||||||| |||||||| |||| | ||||| |||| |||||||||||||||||    
T  3362972 acagagagttat-tgtaattaccgatttcgttttcaattgtgattagctgaaaagat 3363027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 26290097 - 26290173
Alignment:
Q  39 aaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagtt 115  Q
    |||||||||| || ||| | |||||||||||| ||  ||| |||||||||||  | ||||||||||||| |||||||    
T  26290097 aaagattatcgtccacataaagttatatgtaagtattgattttgtttttaatggtaattagctgaaaagttcaagtt 26290173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 9797795 - 9798011
Alignment:
Q  19 atacgattctatctagtagtaaa-gattatca-tctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttg 116  Q
    ||||| ||||||| ||||||||| |||||||| || |||  |||||||||||||||| | |||||||||||  || ||||||||||||||||||||||||    
T  9797795 atacggttctatcgagtagtaaaagattatcaatccacatggagttatatgtaattaccaatcttgtttttcgttttgattagctgaaaagatcaagttg 9797894  T
Q  117 gttggtttcataatttgt-ttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctattt 215  Q
     |||||       ||||| | ||||||||||| ||||||| || |||||||||  ||||||||||| |||||  |||||||||||||| |||||||||||    
T  9797895 tttggt-------tttgtctggttaaaattcatattaaaaagcgtcatgggatcattggtttcatcataatgcgaaatcataaacattccaaatctattt 9797987  T
Q  216 ctatatctttaagttaaattctttt 240  Q
    ||  ||| ||| |||||||||||||    
T  9797988 ctccatc-ttatgttaaattctttt 9798011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 33167886 - 33167971
Alignment:
Q  138 ttaaaattcagat--taaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatat 221  Q
    |||||||||||||  ||||| || ||||||||| |  | ||| ||| |||||||||||| || |||||||| ||||||||||||||    
T  33167886 ttaaaattcagatattaaaaagcgtcatgggatcgaggtttttatcgtaatgtcaaatcctagacatttcatatctatttctatat 33167971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 16998513 - 16998670
Alignment:
Q  58 gagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaagg 157  Q
    ||||||||||||| || | |||||||||| | || |||||||||||||| || |||||||||||||| |||| |  || ||||||||||| ||||||| |    
T  16998513 gagttatatgtaactaccaatcttgtttt-agttttgattagctgaaaaaattaagttggttggttttataaatgcttggttaaaattcatattaaaatg 16998611  T
Q  158 catcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttc 216  Q
      ||||| |||  ||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  16998612 tgtcatgtgatcattggttttatcataatgtcaaatcataaacattccaaatctatttc 16998670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 21515842 - 21515943
Alignment:
Q  141 aaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattctttt 240  Q
    ||||||| ||||||| || ||||||||| ||||||||||||| | |||||| || |||||||| |||  |||||||| |||||||| |||||||||||||    
T  21515842 aaattcaaattaaaaagcgtcatgggatcgttggtttcatctaattgtcaagtcctaaacattccaagcctatttctctatctttaggttaaattctttt 21515941  T
Q  241 ct 242  Q
    ||    
T  21515942 ct 21515943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 21511328 - 21511397
Alignment:
Q  39 aaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagat 109  Q
    |||||||||| || ||| ||||||| | ||||||| |||||||||||| ||| ||| ||||||||||||||    
T  21511328 aaagattatcgtccacatagagttaaa-gtaattaccgatcttgttttcaatgatgcttagctgaaaagat 21511397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 35407104 - 35407066
Alignment:
Q  77 atcttgtttttaattatgattagctgaaaagatcaagtt 115  Q
    |||||||||||| || |||||||||||||||||||||||    
T  35407104 atcttgtttttagttgtgattagctgaaaagatcaagtt 35407066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 17465623 - 17465400
Alignment:
Q  19 atacgattctatctagtagtaaa--gattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttg 116  Q
    ||||| ||||||| |||||||||  ||||||| |  ||||||||||| | ||||||| |||||||||||| | | |||||||||||||||||| |||       
T  17465623 atacggttctatcgagtagtaaaaagattatcgttcacagagagttaaa-gtaattaccgatcttgttttcagtgatgattagctgaaaagattaaggat 17465525  T
Q  117 gttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttc 216  Q
       | ||||| |  || || ||| || |||||||||||| |  |||||| || ||||||||||||| ||||| || || |||||||| ||| |||||| |    
T  17465524 taagatttca-atgttcttagtttaatttcagattaaaaagtgtcatggcatcgttggtttcatctaaatgttaattcctaaacattccaagtctattcc 17465426  T
Q  217 tatatctttaagttaaattcttttct 242  Q
    | |||||||| |||||||||||||||    
T  17465425 tctatctttaggttaaattcttttct 17465400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 11376905 - 11376951
Alignment:
Q  66 tgtaattaacgatcttgtttttaattatgattagctgaaaagatcaa 112  Q
    |||||||| |||| || ||| ||||||||||||||||||||||||||    
T  11376905 tgtaattaccgattttctttctaattatgattagctgaaaagatcaa 11376951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 8899044 - 8898987
Alignment:
Q  160 tcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttct 217  Q
    ||||||||||| |||||||||| |||||||||||| | |||||| |  ||||||||||    
T  8899044 tcatgggattgatggtttcatcataatgtcaaatctttaacattccctatctatttct 8898987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 12272853 - 12272809
Alignment:
Q  171 ttggtttcatcttaatgtcaaatcataaacatttcaaatctattt 215  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||||||    
T  12272853 ttggttttatcttaatgtcaattcataaacattccaagtctattt 12272809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 42687054 - 42687222
Alignment:
Q  77 atcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaag--gcatcatgggattgttgg 174  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||  || ||||||  || ||||||| |||||||||||   || | |||||||  || |    
T  42687054 atcttgtttttaattctgattagcggaaaagattaagttggttgagtttataattgcttggttaaaactcagattaaaaaaagcgtaatgggatcatttg 42687153  T
Q  175 tttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctt-taagttaaattcttttct 242  Q
    ||| ||  ||||| | || |||||||||  ||||||||||||| |||||| || |||||||||||||||    
T  42687154 ttttataataatgccgaaacataaacatgccaaatctatttctctatcttatatgttaaattcttttct 42687222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 19222659 - 19222611
Alignment:
Q  58 gagttatatgtaattaacgatcttgtttttaattatgattagctgaaaa 106  Q
    |||||||||||||||| |||| |  |||| |||||||||||||||||||    
T  19222659 gagttatatgtaattaccgatttccttttcaattatgattagctgaaaa 19222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University