View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9520_1 (Length: 591)
Name: NF9520_1
Description: NF9520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9520_1 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 363 - 591
Target Start/End: Complemental strand, 32707368 - 32707134
Alignment:
| Q |
363 |
acgttcacttggaatgaagcagatgaggttgtcactgatgagttggctgaagagtgatttgatggattcttcttagctcagtgattttccagaactcatt |
462 |
Q |
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| T |
32707368 |
acgttcacttggactgaagcagatgaggttgtcactgatgagttggctgaagagtgatttgatggattcttcttagctcagtgattttccagaactcatt |
32707269 |
T |
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| Q |
463 |
gtgaatcaaaacatacaatgattcaaggtt------acttgttaatttaatcaaagaaacaagttaaagagttccataggagggatgattttgaggtagc |
556 |
Q |
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| T |
32707268 |
gtgaatcaaaacatacaatgattcaaggttgataacacttgttaatttaatcaaagaaacaagttaaagagttccataggagggatgattttgaggtagc |
32707169 |
T |
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| Q |
557 |
aagtgctgataagaactttgagagcacacccaagg |
591 |
Q |
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| T |
32707168 |
aagtgctgataagaactttgagagcacacccaagg |
32707134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 179 - 341
Target Start/End: Complemental strand, 32707839 - 32707678
Alignment:
| Q |
179 |
ctaattattacagaaaataccatcttattttcactttgtacgcnnnnnnnnnnnaattatagaaaactgcgaaaacataattgttttaggaaaacttagt |
278 |
Q |
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| T |
32707839 |
ctaattattacagaaaataccatcttattttcactttgt-cgctttttttttttaattatagaaaactgcgaaaacataattgttttagaaaaacttagt |
32707741 |
T |
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| Q |
279 |
gtaaacattcatatgtaccaaccaaagaaaccaagtgtaaagtgtaaacgcggtggtatattt |
341 |
Q |
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| T |
32707740 |
gtaaacattcatatgtaccaaccaaagaaaccaagtgtaaagtgtaaacgcggtggtatattt |
32707678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 32708003 - 32707907
Alignment:
| Q |
15 |
aacctgtgttgaactatatttggtttgaactatatatcattccttttttgcggtgttggtgagggcgaggaacctttatgagcttgaagatcttgtt |
111 |
Q |
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| T |
32708003 |
aacctgtgttgaactatatttggtttgaactatatatcattccttttttgcggtgttggtgagggcgaggaacctttatgagcttgaagatcttgtt |
32707907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 520 - 591
Target Start/End: Complemental strand, 16895264 - 16895193
Alignment:
| Q |
520 |
ttaaagagttccataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaagg |
591 |
Q |
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| T |
16895264 |
ttaaagagttccataggagggatggttttgaggtagcaagtgctgataagatctttgagagcacatccaagg |
16895193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 16959622 - 16959676
Alignment:
| Q |
50 |
atcattccttttttgcggtgttggtgagggcgaggaacctttatgagcttgaaga |
104 |
Q |
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| T |
16959622 |
atcattccttttttggtgtgttggtgagggcaagaaacctttatgagcttaaaga |
16959676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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