View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9520_low_1 (Length: 551)
Name: NF9520_low_1
Description: NF9520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9520_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 3001689 - 3002011
Alignment:
| Q |
1 |
atcccagatatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaa |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
3001689 |
atcccacatatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaa |
3001788 |
T |
|
| Q |
101 |
tgtctaaattg-tgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatataatga |
199 |
Q |
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||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
3001789 |
tgtctaaattgttgccactacggaaatattttactagcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatga |
3001888 |
T |
|
| Q |
200 |
ttgatatctaatgatatattgtactaaatgggatagtaatactatttaaaggttgcataaacggtaattgctgcagtttcttgtccaaactttatgac-a |
298 |
Q |
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||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3001889 |
ttg-tatgtaatgatatattatactaaatgggatagtaatactatttaaaggttgcataaatggtaattgctgcagtttcttgtccaaactttatgactt |
3001987 |
T |
|
| Q |
299 |
ttgacttgtttttacagagttatc |
322 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
3001988 |
ttgacttgtttttacatagttatc |
3002011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 338 - 537
Target Start/End: Original strand, 16895055 - 16895253
Alignment:
| Q |
338 |
taaacccagttgaatcatgcagtatacacatt--gggtctaaaatgttttctcttccccaaaaggaaaagtatatgtacatgatgatgatgatggtagag |
435 |
Q |
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|||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||| || ||||| | || | | |
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| T |
16895055 |
taaacccaattgaatcatgcagtatacatattatgggtctaaaatgttttctcttccccaaagggaaaagta---gtatctgtacatgatcacggcacac |
16895151 |
T |
|
| Q |
436 |
actgagatgagcatcctaagagcctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctccta |
535 |
Q |
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|||||| ||| |||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
16895152 |
tctgagacaagcctcctaagagcctactctactcacttgttccttggatgtgctctcaaagatcttatcagcacttgctacctcaaaaccatccctccta |
16895251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 32706891 - 32707096
Alignment:
| Q |
1 |
atcccagatatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706891 |
atcccagatatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaa |
32706990 |
T |
|
| Q |
101 |
tgtctaaattgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatataatgat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
32706991 |
tgtctaaattgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgcttttacatctgctgctgcacaatataatgat |
32707090 |
T |
|
| Q |
201 |
tgatat |
206 |
Q |
| |
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|||||| |
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| T |
32707091 |
tgatat |
32707096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 459 - 537
Target Start/End: Original strand, 32707116 - 32707194
Alignment:
| Q |
459 |
ctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatg |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32707116 |
ctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatg |
32707194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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